Dandekar T - Search Results

1

A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks.

Schuster S, Fell DA, Dandekar T. Schuster S, et al. Among authors: dandekar t. Nat Biotechnol. 2000 Mar;18(3):326-32. doi: 10.1038/73786. Nat Biotechnol. 2000. PMID: 10700151

2

Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering.

Schuster S, Dandekar T, Fell DA. Schuster S, et al. Among authors: dandekar t. Trends Biotechnol. 1999 Feb;17(2):53-60. doi: 10.1016/s0167-7799(98)01290-6. Trends Biotechnol. 1999. PMID: 10087604 Review.

3

Pathway alignment: application to the comparative analysis of glycolytic enzymes.

Dandekar T, Schuster S, Snel B, Huynen M, Bork P. Dandekar T, et al. Biochem J. 1999 Oct 1;343 Pt 1(Pt 1):115-24. Biochem J. 1999. PMID: 10493919 Free PMC article.

4

Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae.

Schuster S, Pfeiffer T, Moldenhauer F, Koch I, Dandekar T. Schuster S, et al. Among authors: dandekar t. Bioinformatics. 2002 Feb;18(2):351-61. doi: 10.1093/bioinformatics/18.2.351. Bioinformatics. 2002. PMID: 11847093

5

A method for classifying metabolites in topological pathway analyses based on minimization of pathway number.

Dandekar T, Moldenhauer F, Bulik S, Bertram H, Schuster S. Dandekar T, et al. Biosystems. 2003 Aug;70(3):255-70. doi: 10.1016/s0303-2647(03)00067-4. Biosystems. 2003. PMID: 12941488

6

YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities.

Schwarz R, Musch P, von Kamp A, Engels B, Schirmer H, Schuster S, Dandekar T. Schwarz R, et al. Among authors: dandekar t. BMC Bioinformatics. 2005 Jun 1;6:135. doi: 10.1186/1471-2105-6-135. BMC Bioinformatics. 2005. PMID: 15929789 Free PMC article.

7

Use of pathway analysis and genome context methods for functional genomics of Mycoplasma pneumoniae nucleotide metabolism.

Pachkov M, Dandekar T, Korbel J, Bork P, Schuster S. Pachkov M, et al. Among authors: dandekar t. Gene. 2007 Jul 15;396(2):215-25. doi: 10.1016/j.gene.2007.02.033. Epub 2007 Mar 24. Gene. 2007. PMID: 17467928

8

Integrated network reconstruction, visualization and analysis using YANAsquare.

Schwarz R, Liang C, Kaleta C, Kühnel M, Hoffmann E, Kuznetsov S, Hecker M, Griffiths G, Schuster S, Dandekar T. Schwarz R, et al. Among authors: dandekar t. BMC Bioinformatics. 2007 Aug 28;8:313. doi: 10.1186/1471-2105-8-313. BMC Bioinformatics. 2007. PMID: 17725829 Free PMC article.

9

Metabolic adaptation and protein complexes in prokaryotes.

Krüger B, Liang C, Prell F, Fieselmann A, Moya A, Schuster S, Völker U, Dandekar T. Krüger B, et al. Among authors: dandekar t. Metabolites. 2012 Nov 16;2(4):940-58. doi: 10.3390/metabo2040940. Metabolites. 2012. PMID: 24957769 Free PMC article.

10

Host-pathogen interactions between the human innate immune system and Candida albicans-understanding and modeling defense and evasion strategies.

Dühring S, Germerodt S, Skerka C, Zipfel PF, Dandekar T, Schuster S. Dühring S, et al. Among authors: dandekar t. Front Microbiol. 2015 Jun 30;6:625. doi: 10.3389/fmicb.2015.00625. eCollection 2015. Front Microbiol. 2015. PMID: 26175718 Free PMC article. Review.

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