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Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life.
Thole S, Kalhoefer D, Voget S, Berger M, Engelhardt T, Liesegang H, Wollherr A, Kjelleberg S, Daniel R, Simon M, Thomas T, Brinkhoff T. Thole S, et al. ISME J. 2012 Dec;6(12):2229-44. doi: 10.1038/ismej.2012.62. Epub 2012 Jun 21. ISME J. 2012. PMID: 22717884 Free PMC article.
The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea.
Wagner-Döbler I, Ballhausen B, Berger M, Brinkhoff T, Buchholz I, Bunk B, Cypionka H, Daniel R, Drepper T, Gerdts G, Hahnke S, Han C, Jahn D, Kalhoefer D, Kiss H, Klenk HP, Kyrpides N, Liebl W, Liesegang H, Meincke L, Pati A, Petersen J, Piekarski T, Pommerenke C, Pradella S, Pukall R, Rabus R, Stackebrandt E, Thole S, Thompson L, Tielen P, Tomasch J, von Jan M, Wanphrut N, Wichels A, Zech H, Simon M. Wagner-Döbler I, et al. ISME J. 2010 Jan;4(1):61-77. doi: 10.1038/ismej.2009.94. Epub 2009 Sep 10. ISME J. 2010. PMID: 19741735
Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8.
Farnbacher M, Jahns T, Willrodt D, Daniel R, Haas R, Goesmann A, Kurtz S, Rieder G. Farnbacher M, et al. BMC Genomics. 2010 May 27;11:335. doi: 10.1186/1471-2164-11-335. BMC Genomics. 2010. PMID: 20507619 Free PMC article.
Host imprints on bacterial genomes--rapid, divergent evolution in individual patients.
Zdziarski J, Brzuszkiewicz E, Wullt B, Liesegang H, Biran D, Voigt B, Grönberg-Hernandez J, Ragnarsdottir B, Hecker M, Ron EZ, Daniel R, Gottschalk G, Hacker J, Svanborg C, Dobrindt U. Zdziarski J, et al. PLoS Pathog. 2010 Aug 26;6(8):e1001078. doi: 10.1371/journal.ppat.1001078. PLoS Pathog. 2010. PMID: 20865122 Free PMC article.
Comparative genome analysis and genome-guided physiological analysis of Roseobacter litoralis.
Kalhoefer D, Thole S, Voget S, Lehmann R, Liesegang H, Wollher A, Daniel R, Simon M, Brinkhoff T. Kalhoefer D, et al. BMC Genomics. 2011 Jun 21;12:324. doi: 10.1186/1471-2164-12-324. BMC Genomics. 2011. PMID: 21693016 Free PMC article.
Of the 4537 genes predicted for R. litoralis, 1122 (24.7%) are not present in the genome of R. denitrificans. Many of the unique genes of R. litoralis are located in genomic islands and on plasmids. ...The comparison of the heavy metal tolerance of the two or …
Of the 4537 genes predicted for R. litoralis, 1122 (24.7%) are not present in the genome of R. denitrificans. Many of the uniq …
Biogeography and phylogenetic diversity of a cluster of exclusively marine myxobacteria.
Brinkhoff T, Fischer D, Vollmers J, Voget S, Beardsley C, Thole S, Mussmann M, Kunze B, Wagner-Döbler I, Daniel R, Simon M. Brinkhoff T, et al. ISME J. 2012 Jun;6(6):1260-72. doi: 10.1038/ismej.2011.190. Epub 2011 Dec 22. ISME J. 2012. PMID: 22189493 Free PMC article.
Poles apart: Arctic and Antarctic Octadecabacter strains share high genome plasticity and a new type of xanthorhodopsin.
Vollmers J, Voget S, Dietrich S, Gollnow K, Smits M, Meyer K, Brinkhoff T, Simon M, Daniel R. Vollmers J, et al. PLoS One. 2013 May 6;8(5):e63422. doi: 10.1371/journal.pone.0063422. Print 2013. PLoS One. 2013. PMID: 23671678 Free PMC article.
Planktomarina temperata gen. nov., sp. nov., belonging to the globally distributed RCA cluster of the marine Roseobacter clade, isolated from the German Wadden Sea.
Giebel HA, Kalhoefer D, Gahl-Janssen R, Choo YJ, Lee K, Cho JC, Tindall BJ, Rhiel E, Beardsley C, Aydogmus ÖO, Voget S, Daniel R, Simon M, Brinkhoff T. Giebel HA, et al. Int J Syst Evol Microbiol. 2013 Nov;63(Pt 11):4207-4217. doi: 10.1099/ijs.0.053249-0. Epub 2013 Jun 21. Int J Syst Evol Microbiol. 2013. PMID: 23793856
Adaptation of an abundant Roseobacter RCA organism to pelagic systems revealed by genomic and transcriptomic analyses.
Voget S, Wemheuer B, Brinkhoff T, Vollmers J, Dietrich S, Giebel HA, Beardsley C, Sardemann C, Bakenhus I, Billerbeck S, Daniel R, Simon M. Voget S, et al. ISME J. 2015 Feb;9(2):371-84. doi: 10.1038/ismej.2014.134. Epub 2014 Aug 1. ISME J. 2015. PMID: 25083934 Free PMC article.
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