Dao P - Search Results

1

Applicability domains for classification problems: Benchmarking of distance to models for Ames mutagenicity set.

Sushko I, Novotarskyi S, Körner R, Pandey AK, Cherkasov A, Li J, Gramatica P, Hansen K, Schroeter T, Müller KR, Xi L, Liu H, Yao X, Öberg T, Hormozdiari F, Dao P, Sahinalp C, Todeschini R, Polishchuk P, Artemenko A, Kuz'min V, Martin TM, Young DM, Fourches D, Muratov E, Tropsha A, Baskin I, Horvath D, Marcou G, Muller C, Varnek A, Prokopenko VV, Tetko IV. Sushko I, et al. Among authors: dao p. J Chem Inf Model. 2010 Dec 27;50(12):2094-111. doi: 10.1021/ci100253r. Epub 2010 Oct 29. J Chem Inf Model. 2010. PMID: 21033656

2

Combinatorial QSAR modeling of chemical toxicants tested against Tetrahymena pyriformis.

Zhu H, Tropsha A, Fourches D, Varnek A, Papa E, Gramatica P, Oberg T, Dao P, Cherkasov A, Tetko IV. Zhu H, et al. Among authors: dao p. J Chem Inf Model. 2008 Apr;48(4):766-84. doi: 10.1021/ci700443v. Epub 2008 Mar 1. J Chem Inf Model. 2008. PMID: 18311912 Free article.

3

Mapping the protein interaction network in methicillin-resistant Staphylococcus aureus.

Cherkasov A, Hsing M, Zoraghi R, Foster LJ, See RH, Stoynov N, Jiang J, Kaur S, Lian T, Jackson L, Gong H, Swayze R, Amandoron E, Hormozdiari F, Dao P, Sahinalp C, Santos-Filho O, Axerio-Cilies P, Byler K, McMaster WR, Brunham RC, Finlay BB, Reiner NE. Cherkasov A, et al. Among authors: dao p. J Proteome Res. 2011 Mar 4;10(3):1139-50. doi: 10.1021/pr100918u. Epub 2011 Jan 28. J Proteome Res. 2011. PMID: 21166474

4

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes.

Yu NY, Wagner JR, Laird MR, Melli G, Rey S, Lo R, Dao P, Sahinalp SC, Ester M, Foster LJ, Brinkman FS. Yu NY, et al. Among authors: dao p. Bioinformatics. 2010 Jul 1;26(13):1608-15. doi: 10.1093/bioinformatics/btq249. Epub 2010 May 13. Bioinformatics. 2010. PMID: 20472543 Free PMC article.

5

Optimally discriminative subnetwork markers predict response to chemotherapy.

Dao P, Wang K, Collins C, Ester M, Lapuk A, Sahinalp SC. Dao P, et al. Bioinformatics. 2011 Jul 1;27(13):i205-13. doi: 10.1093/bioinformatics/btr245. Bioinformatics. 2011. PMID: 21685072 Free PMC article.

6

Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery.

Hormozdiari F, Hajirasouliha I, Dao P, Hach F, Yorukoglu D, Alkan C, Eichler EE, Sahinalp SC. Hormozdiari F, et al. Among authors: dao p. Bioinformatics. 2010 Jun 15;26(12):i350-7. doi: 10.1093/bioinformatics/btq216. Bioinformatics. 2010. PMID: 20529927 Free PMC article.

7

Inferring cancer subnetwork markers using density-constrained biclustering.

Dao P, Colak R, Salari R, Moser F, Davicioni E, Schönhuth A, Ester M. Dao P, et al. Bioinformatics. 2010 Sep 15;26(18):i625-31. doi: 10.1093/bioinformatics/btq393. Bioinformatics. 2010. PMID: 20823331 Free PMC article.

8

ORMAN: optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms.

Dao P, Numanagić I, Lin YY, Hach F, Karakoc E, Donmez N, Collins C, Eichler EE, Sahinalp SC. Dao P, et al. Bioinformatics. 2014 Mar 1;30(5):644-51. doi: 10.1093/bioinformatics/btt591. Epub 2013 Oct 15. Bioinformatics. 2014. PMID: 24130305

9

Biomolecular network motif counting and discovery by color coding.

Alon N, Dao P, Hajirasouliha I, Hormozdiari F, Sahinalp SC. Alon N, et al. Among authors: dao p. Bioinformatics. 2008 Jul 1;24(13):i241-9. doi: 10.1093/bioinformatics/btn163. Bioinformatics. 2008. PMID: 18586721 Free PMC article.

10

HIT'nDRIVE: patient-specific multidriver gene prioritization for precision oncology.

Shrestha R, Hodzic E, Sauerwald T, Dao P, Wang K, Yeung J, Anderson S, Vandin F, Haffari G, Collins CC, Sahinalp SC. Shrestha R, et al. Among authors: dao p. Genome Res. 2017 Sep;27(9):1573-1588. doi: 10.1101/gr.221218.117. Epub 2017 Jul 18. Genome Res. 2017. PMID: 28768687 Free PMC article.

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