Das P - Search Results

1

SMILE: mutual information learning for integration of single-cell omics data.

Xu Y, Das P, McCord RP. Xu Y, et al. Among authors: das p. Bioinformatics. 2022 Jan 3;38(2):476-486. doi: 10.1093/bioinformatics/btab706. Bioinformatics. 2022. PMID: 34623402 Free PMC article.

2

Using contact statistics to characterize structure transformation of biopolymer ensembles.

Das P, Golloshi R, McCord RP, Shen T. Das P, et al. Phys Rev E. 2020 Jan;101(1-1):012419. doi: 10.1103/PhysRevE.101.012419. Phys Rev E. 2020. PMID: 32069653 Free PMC article.

3

Inferring chromosome radial organization from Hi-C data.

Das P, Shen T, McCord RP. Das P, et al. BMC Bioinformatics. 2020 Nov 10;21(1):511. doi: 10.1186/s12859-020-03841-7. BMC Bioinformatics. 2020. PMID: 33167851 Free PMC article.

4

Chromosome compartmentalization alterations in prostate cancer cell lines model disease progression.

San Martin R, Das P, Dos Reis Marques R, Xu Y, Roberts JM, Sanders JT, Golloshi R, McCord RP. San Martin R, et al. Among authors: das p. J Cell Biol. 2022 Feb 7;221(2):e202104108. doi: 10.1083/jcb.202104108. Epub 2021 Dec 10. J Cell Biol. 2022. PMID: 34889941 Free PMC article.

5

Loops, topologically associating domains, compartments, and territories are elastic and robust to dramatic nuclear volume swelling.

Sanders JT, Golloshi R, Das P, Xu Y, Terry PH, Nash DG, Dekker J, McCord RP. Sanders JT, et al. Among authors: das p. Sci Rep. 2022 Mar 18;12(1):4721. doi: 10.1038/s41598-022-08602-5. Sci Rep. 2022. PMID: 35304523 Free PMC article.

6

SnapShot: Chromosome organization.

McCord RP, Xu Y, Li H, Das P, San Martin R. McCord RP, et al. Among authors: das p. Mol Cell. 2022 Jun 16;82(12):2350-2350.e1. doi: 10.1016/j.molcel.2022.05.020. Mol Cell. 2022. PMID: 35714589 Free article.

7

Constricted migration is associated with stable 3D genome structure differences in cancer cells.

Golloshi R, Playter C, Freeman TF, Das P, Raines TI, Garretson JH, Thurston D, McCord RP. Golloshi R, et al. Among authors: das p. EMBO Rep. 2022 Oct 6;23(10):e52149. doi: 10.15252/embr.202052149. Epub 2022 Aug 15. EMBO Rep. 2022. PMID: 35969179 Free PMC article.

8

Characterizing the variation in chromosome structure ensembles in the context of the nuclear microenvironment.

Das P, Shen T, McCord RP. Das P, et al. PLoS Comput Biol. 2022 Aug 15;18(8):e1010392. doi: 10.1371/journal.pcbi.1010392. eCollection 2022 Aug. PLoS Comput Biol. 2022. PMID: 35969616 Free PMC article.

9

Transcriptional profiling of Hutchinson-Gilford Progeria syndrome fibroblasts reveals deficits in mesenchymal stem cell commitment to differentiation related to early events in endochondral ossification.

San Martin R, Das P, Sanders JT, Hill AM, McCord RP. San Martin R, et al. Among authors: das p. Elife. 2022 Dec 29;11:e81290. doi: 10.7554/eLife.81290. Elife. 2022. PMID: 36579892 Free PMC article.

10

Differential contributions of nuclear lamina association and genome compartmentalization to gene regulation.

Das P, San Martin R, McCord RP. Das P, et al. Nucleus. 2023 Dec;14(1):2197693. doi: 10.1080/19491034.2023.2197693. Nucleus. 2023. PMID: 37017584 Free PMC article.

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