De Kumar B - Search Results

1

Dynamic transcriptional events in embryonic stem cells mediated by the super elongation complex (SEC).

Lin C, Garrett AS, De Kumar B, Smith ER, Gogol M, Seidel C, Krumlauf R, Shilatifard A. Lin C, et al. Among authors: de kumar b. Genes Dev. 2011 Jul 15;25(14):1486-98. doi: 10.1101/gad.2059211. Genes Dev. 2011. PMID: 21764852 Free PMC article.

2

Poised RNA polymerase II changes over developmental time and prepares genes for future expression.

Gaertner B, Johnston J, Chen K, Wallaschek N, Paulson A, Garruss AS, Gaudenz K, De Kumar B, Krumlauf R, Zeitlinger J. Gaertner B, et al. Among authors: de kumar b. Cell Rep. 2012 Dec 27;2(6):1670-83. doi: 10.1016/j.celrep.2012.11.024. Epub 2012 Dec 20. Cell Rep. 2012. PMID: 23260668 Free PMC article.

3

Hox complex analysis through BAC recombineering.

Parrish M, Ahn Y, Nolte C, De Kumar B, Krumlauf R. Parrish M, et al. Among authors: de kumar b. Methods Mol Biol. 2014;1196:59-87. doi: 10.1007/978-1-4939-1242-1_5. Methods Mol Biol. 2014. PMID: 25151158

4

Analysis of dynamic changes in retinoid-induced transcription and epigenetic profiles of murine Hox clusters in ES cells.

De Kumar B, Parrish ME, Slaughter BD, Unruh JR, Gogol M, Seidel C, Paulson A, Li H, Gaudenz K, Peak A, McDowell W, Fleharty B, Ahn Y, Lin C, Smith E, Shilatifard A, Krumlauf R. De Kumar B, et al. Genome Res. 2015 Aug;25(8):1229-43. doi: 10.1101/gr.184978.114. Epub 2015 May 29. Genome Res. 2015. PMID: 26025802 Free PMC article.

5

HOXs and lincRNAs: Two sides of the same coin.

De Kumar B, Krumlauf R. De Kumar B, et al. Sci Adv. 2016 Jan 29;2(1):e1501402. doi: 10.1126/sciadv.1501402. eCollection 2016 Jan. Sci Adv. 2016. PMID: 27034976 Free PMC article. Review.

6

Dynamic regulation of Nanog and stem cell-signaling pathways by Hoxa1 during early neuro-ectodermal differentiation of ES cells.

De Kumar B, Parker HJ, Parrish ME, Lange JJ, Slaughter BD, Unruh JR, Paulson A, Krumlauf R. De Kumar B, et al. Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):5838-5845. doi: 10.1073/pnas.1610612114. Proc Natl Acad Sci U S A. 2017. PMID: 28584089 Free PMC article.

7

HOXA1 and TALE proteins display cross-regulatory interactions and form a combinatorial binding code on HOXA1 targets.

De Kumar B, Parker HJ, Paulson A, Parrish ME, Pushel I, Singh NP, Zhang Y, Slaughter BD, Unruh JR, Florens L, Zeitlinger J, Krumlauf R. De Kumar B, et al. Genome Res. 2017 Sep;27(9):1501-1512. doi: 10.1101/gr.219386.116. Epub 2017 Aug 7. Genome Res. 2017. PMID: 28784834 Free PMC article.

8

Hoxa1 targets signaling pathways during neural differentiation of ES cells and mouse embryogenesis.

De Kumar B, Parker HJ, Paulson A, Parrish ME, Zeitlinger J, Krumlauf R. De Kumar B, et al. Dev Biol. 2017 Dec 1;432(1):151-164. doi: 10.1016/j.ydbio.2017.09.033. Epub 2017 Oct 2. Dev Biol. 2017. PMID: 28982536 Free article.

9

Retinoid-Sensitive Epigenetic Regulation of the Hoxb Cluster Maintains Normal Hematopoiesis and Inhibits Leukemogenesis.

Qian P, De Kumar B, He XC, Nolte C, Gogol M, Ahn Y, Chen S, Li Z, Xu H, Perry JM, Hu D, Tao F, Zhao M, Han Y, Hall K, Peak A, Paulson A, Zhao C, Venkatraman A, Box A, Perera A, Haug JS, Parmely T, Li H, Krumlauf R, Li L. Qian P, et al. Among authors: de kumar b. Cell Stem Cell. 2018 May 3;22(5):740-754.e7. doi: 10.1016/j.stem.2018.04.012. Cell Stem Cell. 2018. PMID: 29727682 Free article.

10

A Hox-TALE regulatory circuit for neural crest patterning is conserved across vertebrates.

Parker HJ, De Kumar B, Green SA, Prummel KD, Hess C, Kaufman CK, Mosimann C, Wiedemann LM, Bronner ME, Krumlauf R. Parker HJ, et al. Among authors: de kumar b. Nat Commun. 2019 Mar 13;10(1):1189. doi: 10.1038/s41467-019-09197-8. Nat Commun. 2019. PMID: 30867425 Free PMC article.

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