DeSantis TZ - Search Results

1

Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers.

Liu Z, DeSantis TZ, Andersen GL, Knight R. Liu Z, et al. Among authors: desantis tz. Nucleic Acids Res. 2008 Oct;36(18):e120. doi: 10.1093/nar/gkn491. Epub 2008 Aug 22. Nucleic Acids Res. 2008. PMID: 18723574 Free PMC article.

2

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea.

McDonald D, Price MN, Goodrich J, Nawrocki EP, DeSantis TZ, Probst A, Andersen GL, Knight R, Hugenholtz P. McDonald D, et al. Among authors: desantis tz. ISME J. 2012 Mar;6(3):610-8. doi: 10.1038/ismej.2011.139. Epub 2011 Dec 1. ISME J. 2012. PMID: 22134646 Free PMC article.

3

High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment.

DeSantis TZ, Brodie EL, Moberg JP, Zubieta IX, Piceno YM, Andersen GL. DeSantis TZ, et al. Microb Ecol. 2007 Apr;53(3):371-83. doi: 10.1007/s00248-006-9134-9. Epub 2007 Mar 2. Microb Ecol. 2007. PMID: 17334858

4

PyNAST: a flexible tool for aligning sequences to a template alignment.

Caporaso JG, Bittinger K, Bushman FD, DeSantis TZ, Andersen GL, Knight R. Caporaso JG, et al. Among authors: desantis tz. Bioinformatics. 2010 Jan 15;26(2):266-7. doi: 10.1093/bioinformatics/btp636. Epub 2009 Nov 13. Bioinformatics. 2010. PMID: 19914921 Free PMC article.

5

Supervised classification of microbiota mitigates mislabeling errors.

Knights D, Kuczynski J, Koren O, Ley RE, Field D, Knight R, DeSantis TZ, Kelley ST. Knights D, et al. Among authors: desantis tz. ISME J. 2011 Apr;5(4):570-3. doi: 10.1038/ismej.2010.148. Epub 2010 Oct 7. ISME J. 2011. PMID: 20927137 Free PMC article. No abstract available.

6

NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes.

DeSantis TZ Jr, Hugenholtz P, Keller K, Brodie EL, Larsen N, Piceno YM, Phan R, Andersen GL. DeSantis TZ Jr, et al. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W394-9. doi: 10.1093/nar/gkl244. Nucleic Acids Res. 2006. PMID: 16845035 Free PMC article.

7

Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool.

Dalevi D, Desantis TZ, Fredslund J, Andersen GL, Markowitz VM, Hugenholtz P. Dalevi D, et al. Among authors: desantis tz. BMC Bioinformatics. 2007 Oct 18;8:402. doi: 10.1186/1471-2105-8-402. BMC Bioinformatics. 2007. PMID: 17949484 Free PMC article.

8

A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells.

Wrighton KC, Agbo P, Warnecke F, Weber KA, Brodie EL, DeSantis TZ, Hugenholtz P, Andersen GL, Coates JD. Wrighton KC, et al. Among authors: desantis tz. ISME J. 2008 Nov;2(11):1146-56. doi: 10.1038/ismej.2008.48. Epub 2008 Sep 4. ISME J. 2008. PMID: 18769460 Free article.

9

Environmental microarray analyses of Antarctic soil microbial communities.

Yergeau E, Schoondermark-Stolk SA, Brodie EL, Déjean S, DeSantis TZ, Gonçalves O, Piceno YM, Andersen GL, Kowalchuk GA. Yergeau E, et al. Among authors: desantis tz. ISME J. 2009 Mar;3(3):340-51. doi: 10.1038/ismej.2008.111. Epub 2008 Nov 20. ISME J. 2009. PMID: 19020556 Free article.

10

Animal-to-animal variation in fecal microbial diversity among beef cattle.

Durso LM, Harhay GP, Smith TP, Bono JL, Desantis TZ, Harhay DM, Andersen GL, Keen JE, Laegreid WW, Clawson ML. Durso LM, et al. Among authors: desantis tz. Appl Environ Microbiol. 2010 Jul;76(14):4858-62. doi: 10.1128/AEM.00207-10. Epub 2010 May 14. Appl Environ Microbiol. 2010. PMID: 20472731 Free PMC article.

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