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Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13.
Hall N, Pain A, Berriman M, Churcher C, Harris B, Harris D, Mungall K, Bowman S, Atkin R, Baker S, Barron A, Brooks K, Buckee CO, Burrows C, Cherevach I, Chillingworth C, Chillingworth T, Christodoulou Z, Clark L, Clark R, Corton C, Cronin A, Davies R, Davis P, Dear P, Dearden F, Doggett J, Feltwell T, Goble A, Goodhead I, Gwilliam R, Hamlin N, Hance Z, Harper D, Hauser H, Hornsby T, Holroyd S, Horrocks P, Humphray S, Jagels K, James KD, Johnson D, Kerhornou A, Knights A, Konfortov B, Kyes S, Larke N, Lawson D, Lennard N, Line A, Maddison M, McLean J, Mooney P, Moule S, Murphy L, Oliver K, Ormond D, Price C, Quail MA, Rabbinowitsch E, Rajandream MA, Rutter S, Rutherford KM, Sanders M, Simmonds M, Seeger K, Sharp S, Smith R, Squares R, Squares S, Stevens K, Taylor K, Tivey A, Unwin L, Whitehead S, Woodward J, Sulston JE, Craig A, Newbold C, Barrell BG. Hall N, et al. Nature. 2002 Oct 3;419(6906):527-31. doi: 10.1038/nature01095. Nature. 2002. PMID: 12368867
Sequence and analysis of chromosome 2 of Dictyostelium discoideum.
Glöckner G, Eichinger L, Szafranski K, Pachebat JA, Bankier AT, Dear PH, Lehmann R, Baumgart C, Parra G, Abril JF, Guigó R, Kumpf K, Tunggal B, Cox E, Quail MA, Platzer M, Rosenthal A, Noegel AA; Dictyostelium Genome Sequencing Consortium. Glöckner G, et al. Nature. 2002 Jul 4;418(6893):79-85. doi: 10.1038/nature00847. Nature. 2002. PMID: 12097910
The imprint of somatic hypermutation on the repertoire of human germline V genes.
Tomlinson IM, Walter G, Jones PT, Dear PH, Sonnhammer EL, Winter G. Tomlinson IM, et al. J Mol Biol. 1996 Mar 15;256(5):813-17. doi: 10.1006/jmbi.1996.0127. J Mol Biol. 1996. PMID: 8601832
A high-resolution HAPPY map of Dictyostelium discoideum chromosome 6.
Konfortov BA, Cohen HM, Bankier AT, Dear PH. Konfortov BA, et al. Genome Res. 2000 Nov;10(11):1737-42. doi: 10.1101/gr.141700. Genome Res. 2000. PMID: 11076859 Free PMC article.
Multiplex amplification of the mammoth mitochondrial genome and the evolution of Elephantidae.
Krause J, Dear PH, Pollack JL, Slatkin M, Spriggs H, Barnes I, Lister AM, Ebersberger I, Pääbo S, Hofreiter M. Krause J, et al. Nature. 2006 Feb 9;439(7077):724-7. doi: 10.1038/nature04432. Epub 2005 Dec 18. Nature. 2006. PMID: 16362058
Interrogation of genomes by molecular copy-number counting (MCC).
Daser A, Thangavelu M, Pannell R, Forster A, Sparrow L, Chung G, Dear PH, Rabbitts TH. Daser A, et al. Nat Methods. 2006 Jun;3(6):447-53. doi: 10.1038/nmeth880. Nat Methods. 2006. PMID: 16721378
The genome of the social amoeba Dictyostelium discoideum.
Eichinger L, Pachebat JA, Glöckner G, Rajandream MA, Sucgang R, Berriman M, Song J, Olsen R, Szafranski K, Xu Q, Tunggal B, Kummerfeld S, Madera M, Konfortov BA, Rivero F, Bankier AT, Lehmann R, Hamlin N, Davies R, Gaudet P, Fey P, Pilcher K, Chen G, Saunders D, Sodergren E, Davis P, Kerhornou A, Nie X, Hall N, Anjard C, Hemphill L, Bason N, Farbrother P, Desany B, Just E, Morio T, Rost R, Churcher C, Cooper J, Haydock S, van Driessche N, Cronin A, Goodhead I, Muzny D, Mourier T, Pain A, Lu M, Harper D, Lindsay R, Hauser H, James K, Quiles M, Madan Babu M, Saito T, Buchrieser C, Wardroper A, Felder M, Thangavelu M, Johnson D, Knights A, Loulseged H, Mungall K, Oliver K, Price C, Quail MA, Urushihara H, Hernandez J, Rabbinowitsch E, Steffen D, Sanders M, Ma J, Kohara Y, Sharp S, Simmonds M, Spiegler S, Tivey A, Sugano S, White B, Walker D, Woodward J, Winckler T, Tanaka Y, Shaulsky G, Schleicher M, Weinstock G, Rosenthal A, Cox EC, Chisholm RL, Gibbs R, Loomis WF, Platzer M, Kay RR, Williams J, Dear PH, Noegel AA, Barrell B, Kuspa A. Eichinger L, et al. Nature. 2005 May 5;435(7038):43-57. doi: 10.1038/nature03481. Nature. 2005. PMID: 15875012 Free PMC article.
The genome of Cryptosporidium hominis.
Xu P, Widmer G, Wang Y, Ozaki LS, Alves JM, Serrano MG, Puiu D, Manque P, Akiyoshi D, Mackey AJ, Pearson WR, Dear PH, Bankier AT, Peterson DL, Abrahamsen MS, Kapur V, Tzipori S, Buck GA. Xu P, et al. Nature. 2004 Oct 28;431(7012):1107-12. doi: 10.1038/nature02977. Nature. 2004. PMID: 15510150
Genomic analysis of the causative agents of coccidiosis in domestic chickens.
Reid AJ, Blake DP, Ansari HR, Billington K, Browne HP, Bryant J, Dunn M, Hung SS, Kawahara F, Miranda-Saavedra D, Malas TB, Mourier T, Naghra H, Nair M, Otto TD, Rawlings ND, Rivailler P, Sanchez-Flores A, Sanders M, Subramaniam C, Tay YL, Woo Y, Wu X, Barrell B, Dear PH, Doerig C, Gruber A, Ivens AC, Parkinson J, Rajandream MA, Shirley MW, Wan KL, Berriman M, Tomley FM, Pain A. Reid AJ, et al. Among authors: dear ph. Genome Res. 2014 Oct;24(10):1676-85. doi: 10.1101/gr.168955.113. Epub 2014 Jul 11. Genome Res. 2014. PMID: 25015382 Free PMC article.
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