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The life and death of gene families.
Demuth JP, Hahn MW. Demuth JP, et al. Bioessays. 2009 Jan;31(1):29-39. doi: 10.1002/bies.080085. Bioessays. 2009. PMID: 19153999 Review.
Why chromosome palindromes?
Betrán E, Demuth JP, Williford A. Betrán E, et al. Among authors: demuth jp. Int J Evol Biol. 2012;2012:207958. doi: 10.1155/2012/207958. Epub 2012 Jul 15. Int J Evol Biol. 2012. PMID: 22844637 Free PMC article.
Gene expression levels are correlated with synonymous codon usage, amino acid composition, and gene architecture in the red flour beetle, Tribolium castaneum.
Williford A, Demuth JP. Williford A, et al. Mol Biol Evol. 2012 Dec;29(12):3755-66. doi: 10.1093/molbev/mss184. Epub 2012 Jul 23. Mol Biol Evol. 2012. PMID: 22826459 Free PMC article.
The evolution of mammalian gene families.
Demuth JP, De Bie T, Stajich JE, Cristianini N, Hahn MW. Demuth JP, et al. PLoS One. 2006 Dec 20;1(1):e85. doi: 10.1371/journal.pone.0000085. PLoS One. 2006. PMID: 17183716 Free PMC article.
Evolutionary and biomedical insights from the rhesus macaque genome.
Rhesus Macaque Genome Sequencing and Analysis Consortium, Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM, Mardis ER, Remington KA, Strausberg RL, Venter JC, Wilson RK, Batzer MA, Bustamante CD, Eichler EE, Hahn MW, Hardison RC, Makova KD, Miller W, Milosavljevic A, Palermo RE, Siepel A, Sikela JM, Attaway T, Bell S, Bernard KE, Buhay CJ, Chandrabose MN, Dao M, Davis C, Delehaunty KD, Ding Y, Dinh HH, Dugan-Rocha S, Fulton LA, Gabisi RA, Garner TT, Godfrey J, Hawes AC, Hernandez J, Hines S, Holder M, Hume J, Jhangiani SN, Joshi V, Khan ZM, Kirkness EF, Cree A, Fowler RG, Lee S, Lewis LR, Li Z, Liu YS, Moore SM, Muzny D, Nazareth LV, Ngo DN, Okwuonu GO, Pai G, Parker D, Paul HA, Pfannkoch C, Pohl CS, Rogers YH, Ruiz SJ, Sabo A, Santibanez J, Schneider BW, Smith SM, Sodergren E, Svatek AF, Utterback TR, Vattathil S, Warren W, White CS, Chinwalla AT, Feng Y, Halpern AL, Hillier LW, Huang X, Minx P, Nelson JO, Pepin KH, Qin X, Sutton GG, Venter E, Walenz BP, Wallis JW, Worley KC, Yang SP, Jones SM, Marra MA, Rocchi M, Schein JE, Baertsch R, Clarke L, Csürös M, Glasscock J, Harris RA, Havlak P, Jackson AR, Jiang H, Liu Y, Messina DN, Shen Y, Song HX, Wylie T, Zhang L, Birney E, Han K, Konkel MK, Lee J, Smit AF, Ullmer B, Wang H, Xing J, Burhans R, Cheng Z, Karro JE, Ma J, Raney B, She X, Cox MJ, Demuth JP, Dumas LJ, Han SG, Hopkins J, Karimpour-Fard A, Kim YH, Pollack JR, Vinar T, Addo-Quaye C, Degenhardt J, Denby A, Hubisz MJ, Indap A, Kosiol C, Lahn BT, Lawson HA, Marklein A, Nielsen R, Vallender EJ, Clark AG, Ferguson B, Hernandez RD, Hirani K, Kehrer-Sawatzki H, Kolb J, Patil S, Pu LL, Ren Y, Smith DG, Wheeler DA, Schenck I, Ball EV, Chen R, Cooper DN, Giardine B, Hsu F, Kent WJ, Lesk A, Nelson DL, O'brien WE, Prüfer K, Stenson PD, Wallace JC, Ke H, Liu XM, Wang P, Xiang AP, Yang F, Barber GP, Haussler D, Karolchik D, Kern AD, Kuhn RM, Smith KE, Zwieg AS. Rhesus Macaque Genome Sequencing and Analysis Consortium, et al. Science. 2007 Apr 13;316(5822):222-34. doi: 10.1126/science.1139247. Science. 2007. PMID: 17431167
Accelerated rate of gene gain and loss in primates.
Hahn MW, Demuth JP, Han SG. Hahn MW, et al. Genetics. 2007 Nov;177(3):1941-9. doi: 10.1534/genetics.107.080077. Epub 2007 Oct 18. Genetics. 2007. PMID: 17947411 Free PMC article.
Haldane's Rule: Genetic Bases and Their Empirical Support.
Delph LF, Demuth JP. Delph LF, et al. Among authors: demuth jp. J Hered. 2016 Sep;107(5):383-91. doi: 10.1093/jhered/esw026. Epub 2016 May 27. J Hered. 2016. PMID: 27233288 Review.
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