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Algorithms for automated DNA assembly.
Densmore D, Hsiau TH, Kittleson JT, DeLoache W, Batten C, Anderson JC. Densmore D, et al. Nucleic Acids Res. 2010 May;38(8):2607-16. doi: 10.1093/nar/gkq165. Epub 2010 Mar 23. Nucleic Acids Res. 2010. PMID: 20335162 Free PMC article.
Automated assembly of standard biological parts.
Leguia M, Brophy J, Densmore D, Anderson JC. Leguia M, et al. Among authors: densmore d. Methods Enzymol. 2011;498:363-97. doi: 10.1016/B978-0-12-385120-8.00016-4. Methods Enzymol. 2011. PMID: 21601686
The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology.
Galdzicki M, Clancy KP, Oberortner E, Pocock M, Quinn JY, Rodriguez CA, Roehner N, Wilson ML, Adam L, Anderson JC, Bartley BA, Beal J, Chandran D, Chen J, Densmore D, Endy D, Grünberg R, Hallinan J, Hillson NJ, Johnson JD, Kuchinsky A, Lux M, Misirli G, Peccoud J, Plahar HA, Sirin E, Stan GB, Villalobos A, Wipat A, Gennari JH, Myers CJ, Sauro HM. Galdzicki M, et al. Among authors: densmore d. Nat Biotechnol. 2014 Jun;32(6):545-50. doi: 10.1038/nbt.2891. Epub 2014 Jun 6. Nat Biotechnol. 2014. PMID: 24911500
Essential information for synthetic DNA sequences.
Peccoud J, Anderson JC, Chandran D, Densmore D, Galdzicki M, Lux MW, Rodriguez CA, Stan GB, Sauro HM. Peccoud J, et al. Among authors: densmore d. Nat Biotechnol. 2011 Jan;29(1):22; discussion 22-3. doi: 10.1038/nbt.1753. Nat Biotechnol. 2011. PMID: 21221092 No abstract available.
DeviceEditor visual biological CAD canvas.
Chen J, Densmore D, Ham TS, Keasling JD, Hillson NJ. Chen J, et al. Among authors: densmore d. J Biol Eng. 2012 Feb 28;6(1):1. doi: 10.1186/1754-1611-6-1. J Biol Eng. 2012. PMID: 22373390 Free PMC article.
The Eugene language for synthetic biology.
Bilitchenko L, Liu A, Densmore D. Bilitchenko L, et al. Among authors: densmore d. Methods Enzymol. 2011;498:153-72. doi: 10.1016/B978-0-12-385120-8.00007-3. Methods Enzymol. 2011. PMID: 21601677
59 results