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The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces.
Altenhoff AM, Glover NM, Train CM, Kaleb K, Warwick Vesztrocy A, Dylus D, de Farias TM, Zile K, Stevenson C, Long J, Redestig H, Gonnet GH, Dessimoz C. Altenhoff AM, et al. Among authors: dessimoz c. Nucleic Acids Res. 2018 Jan 4;46(D1):D477-D485. doi: 10.1093/nar/gkx1019. Nucleic Acids Res. 2018. PMID: 29106550 Free PMC article.
Algorithm of OMA for large-scale orthology inference.
Roth AC, Gonnet GH, Dessimoz C. Roth AC, et al. Among authors: dessimoz c. BMC Bioinformatics. 2008 Dec 4;9:518. doi: 10.1186/1471-2105-9-518. BMC Bioinformatics. 2008. PMID: 19055798 Free PMC article.
OMA 2011: orthology inference among 1000 complete genomes.
Altenhoff AM, Schneider A, Gonnet GH, Dessimoz C. Altenhoff AM, et al. Among authors: dessimoz c. Nucleic Acids Res. 2011 Jan;39(Database issue):D289-94. doi: 10.1093/nar/gkq1238. Epub 2010 Nov 27. Nucleic Acids Res. 2011. PMID: 21113020 Free PMC article.
ALF--a simulation framework for genome evolution.
Dalquen DA, Anisimova M, Gonnet GH, Dessimoz C. Dalquen DA, et al. Among authors: dessimoz c. Mol Biol Evol. 2012 Apr;29(4):1115-23. doi: 10.1093/molbev/msr268. Epub 2011 Dec 8. Mol Biol Evol. 2012. PMID: 22160766 Free PMC article.
Inferring orthology and paralogy.
Altenhoff AM, Dessimoz C. Altenhoff AM, et al. Among authors: dessimoz c. Methods Mol Biol. 2012;855:259-79. doi: 10.1007/978-1-61779-582-4_9. Methods Mol Biol. 2012. PMID: 22407712 Review.
117 results