Dewell S - Search Results

1

PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.

Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M, Jungkamp AC, Munschauer M, Ulrich A, Wardle GS, Dewell S, Zavolan M, Tuschl T. Hafner M, et al. Among authors: dewell s. J Vis Exp. 2010 Jul 2;(41):2034. doi: 10.3791/2034. J Vis Exp. 2010. PMID: 20644507 Free PMC article.

2

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP.

Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M Jr, Jungkamp AC, Munschauer M, Ulrich A, Wardle GS, Dewell S, Zavolan M, Tuschl T. Hafner M, et al. Among authors: dewell s. Cell. 2010 Apr 2;141(1):129-41. doi: 10.1016/j.cell.2010.03.009. Cell. 2010. PMID: 20371350 Free PMC article.

3

FMRP targets distinct mRNA sequence elements to regulate protein expression.

Ascano M Jr, Mukherjee N, Bandaru P, Miller JB, Nusbaum JD, Corcoran DL, Langlois C, Munschauer M, Dewell S, Hafner M, Williams Z, Ohler U, Tuschl T. Ascano M Jr, et al. Among authors: dewell s. Nature. 2012 Dec 20;492(7429):382-6. doi: 10.1038/nature11737. Epub 2012 Dec 12. Nature. 2012. PMID: 23235829 Free PMC article.

4

Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites.

Siegel TN, Hekstra DR, Wang X, Dewell S, Cross GA. Siegel TN, et al. Among authors: dewell s. Nucleic Acids Res. 2010 Aug;38(15):4946-57. doi: 10.1093/nar/gkq237. Epub 2010 Apr 12. Nucleic Acids Res. 2010. PMID: 20385579 Free PMC article.

5

Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA-editing targets in transcript 3' UTRs.

Rosenberg BR, Hamilton CE, Mwangi MM, Dewell S, Papavasiliou FN. Rosenberg BR, et al. Among authors: dewell s. Nat Struct Mol Biol. 2011 Feb;18(2):230-6. doi: 10.1038/nsmb.1975. Epub 2011 Jan 23. Nat Struct Mol Biol. 2011. PMID: 21258325 Free PMC article.

6

Identifying mRNA editing deaminase targets by RNA-Seq.

Rosenberg BR, Dewell S, Papavasiliou FN. Rosenberg BR, et al. Among authors: dewell s. Methods Mol Biol. 2011;718:103-19. doi: 10.1007/978-1-61779-018-8_6. Methods Mol Biol. 2011. PMID: 21370044

7

RNA-Seq reveals differential gene expression in Staphylococcus aureus with single-nucleotide resolution.

Osmundson J, Dewell S, Darst SA. Osmundson J, et al. Among authors: dewell s. PLoS One. 2013 Oct 7;8(10):e76572. doi: 10.1371/journal.pone.0076572. eCollection 2013. PLoS One. 2013. PMID: 24116120 Free PMC article.

8

The yeast Snt2 protein coordinates the transcriptional response to hydrogen peroxide-mediated oxidative stress.

Baker LA, Ueberheide BM, Dewell S, Chait BT, Zheng D, Allis CD. Baker LA, et al. Among authors: dewell s. Mol Cell Biol. 2013 Oct;33(19):3735-48. doi: 10.1128/MCB.00025-13. Epub 2013 Jul 22. Mol Cell Biol. 2013. PMID: 23878396 Free PMC article.

9

Four histone variants mark the boundaries of polycistronic transcription units in Trypanosoma brucei.

Siegel TN, Hekstra DR, Kemp LE, Figueiredo LM, Lowell JE, Fenyo D, Wang X, Dewell S, Cross GA. Siegel TN, et al. Among authors: dewell s. Genes Dev. 2009 May 1;23(9):1063-76. doi: 10.1101/gad.1790409. Epub 2009 Apr 15. Genes Dev. 2009. PMID: 19369410 Free PMC article.

10

Distinct factors control histone variant H3.3 localization at specific genomic regions.

Goldberg AD, Banaszynski LA, Noh KM, Lewis PW, Elsaesser SJ, Stadler S, Dewell S, Law M, Guo X, Li X, Wen D, Chapgier A, DeKelver RC, Miller JC, Lee YL, Boydston EA, Holmes MC, Gregory PD, Greally JM, Rafii S, Yang C, Scambler PJ, Garrick D, Gibbons RJ, Higgs DR, Cristea IM, Urnov FD, Zheng D, Allis CD. Goldberg AD, et al. Among authors: dewell s. Cell. 2010 Mar 5;140(5):678-91. doi: 10.1016/j.cell.2010.01.003. Cell. 2010. PMID: 20211137 Free PMC article.

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