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Fine-scale phylogenetic discordance across the house mouse genome.
White MA, Ané C, Dewey CN, Larget BR, Payseur BA. White MA, et al. Among authors: dewey cn. PLoS Genet. 2009 Nov;5(11):e1000729. doi: 10.1371/journal.pgen.1000729. Epub 2009 Nov 20. PLoS Genet. 2009. PMID: 19936022 Free PMC article.
RNA-Seq gene expression estimation with read mapping uncertainty.
Li B, Ruotti V, Stewart RM, Thomson JA, Dewey CN. Li B, et al. Among authors: dewey cn. Bioinformatics. 2010 Feb 15;26(4):493-500. doi: 10.1093/bioinformatics/btp692. Epub 2009 Dec 18. Bioinformatics. 2010. PMID: 20022975 Free PMC article.
Whole-genome alignment.
Dewey CN. Dewey CN. Methods Mol Biol. 2012;855:237-57. doi: 10.1007/978-1-61779-582-4_8. Methods Mol Biol. 2012. PMID: 22407711 Review.
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