Dey F - Search Results

1

Discovery of kinase inhibitors by high-throughput docking and scoring based on a transferable linear interaction energy model.

Kolb P, Huang D, Dey F, Caflisch A. Kolb P, et al. Among authors: dey f. J Med Chem. 2008 Mar 13;51(5):1179-88. doi: 10.1021/jm070654j. Epub 2008 Feb 14. J Med Chem. 2008. PMID: 18271520

2

Fragment-based de novo ligand design by multiobjective evolutionary optimization.

Dey F, Caflisch A. Dey F, et al. J Chem Inf Model. 2008 Mar;48(3):679-90. doi: 10.1021/ci700424b. Epub 2008 Feb 29. J Chem Inf Model. 2008. PMID: 18307332

3

Structure-based prediction of ligand-protein interactions on a genome-wide scale.

Hwang H, Dey F, Petrey D, Honig B. Hwang H, et al. Among authors: dey f. Proc Natl Acad Sci U S A. 2017 Dec 26;114(52):13685-13690. doi: 10.1073/pnas.1705381114. Epub 2017 Dec 11. Proc Natl Acad Sci U S A. 2017. PMID: 29229851 Free PMC article.

4

MarkUs: a server to navigate sequence-structure-function space.

Fischer M, Zhang QC, Dey F, Chen BY, Honig B, Petrey D. Fischer M, et al. Among authors: dey f. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W357-61. doi: 10.1093/nar/gkr468. Epub 2011 Jun 14. Nucleic Acids Res. 2011. PMID: 21672961 Free PMC article.

5

On-rate based optimization of structure-kinetic relationship--surfing the kinetic map.

Schoop A, Dey F. Schoop A, et al. Among authors: dey f. Drug Discov Today Technol. 2015 Oct;17:9-15. doi: 10.1016/j.ddtec.2015.08.003. Epub 2015 Sep 18. Drug Discov Today Technol. 2015. PMID: 26724331 Review.

6

NMR structure of lipoprotein YxeF from Bacillus subtilis reveals a calycin fold and distant homology with the lipocalin Blc from Escherichia coli.

Wu Y, Punta M, Xiao R, Acton TB, Sathyamoorthy B, Dey F, Fischer M, Skerra A, Rost B, Montelione GT, Szyperski T. Wu Y, et al. Among authors: dey f. PLoS One. 2012;7(6):e37404. doi: 10.1371/journal.pone.0037404. Epub 2012 Jun 5. PLoS One. 2012. PMID: 22693626 Free PMC article.

7

Toward a "structural BLAST": using structural relationships to infer function.

Dey F, Cliff Zhang Q, Petrey D, Honig B. Dey F, et al. Protein Sci. 2013 Apr;22(4):359-66. doi: 10.1002/pro.2225. Epub 2013 Feb 21. Protein Sci. 2013. PMID: 23349097 Free PMC article. Review.

8

Author Correction: A new antibiotic traps lipopolysaccharide in its intermembrane transporter.

Pahil KS, Gilman MSA, Baidin V, Clairfeuille T, Mattei P, Bieniossek C, Dey F, Muri D, Baettig R, Lobritz M, Bradley K, Kruse AC, Kahne D. Pahil KS, et al. Among authors: dey f. Nature. 2024 Jan;625(7996):E27. doi: 10.1038/s41586-024-07035-6. Nature. 2024. PMID: 38200318 Free PMC article. No abstract available.

9

A new antibiotic traps lipopolysaccharide in its intermembrane transporter.

Pahil KS, Gilman MSA, Baidin V, Clairfeuille T, Mattei P, Bieniossek C, Dey F, Muri D, Baettig R, Lobritz M, Bradley K, Kruse AC, Kahne D. Pahil KS, et al. Among authors: dey f. Nature. 2024 Jan;625(7995):572-577. doi: 10.1038/s41586-023-06799-7. Epub 2024 Jan 3. Nature. 2024. PMID: 38172635 Free PMC article.

10

A novel antibiotic class targeting the lipopolysaccharide transporter.

Zampaloni C, Mattei P, Bleicher K, Winther L, Thäte C, Bucher C, Adam JM, Alanine A, Amrein KE, Baidin V, Bieniossek C, Bissantz C, Boess F, Cantrill C, Clairfeuille T, Dey F, Di Giorgio P, du Castel P, Dylus D, Dzygiel P, Felici A, García-Alcalde F, Haldimann A, Leipner M, Leyn S, Louvel S, Misson P, Osterman A, Pahil K, Rigo S, Schäublin A, Scharf S, Schmitz P, Stoll T, Trauner A, Zoffmann S, Kahne D, Young JAT, Lobritz MA, Bradley KA. Zampaloni C, et al. Among authors: dey f. Nature. 2024 Jan;625(7995):566-571. doi: 10.1038/s41586-023-06873-0. Epub 2024 Jan 3. Nature. 2024. PMID: 38172634 Free PMC article.

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