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Varying virulence: epigenetic control of expression noise and disease processes.
Miller-Jensen K, Dey SS, Schaffer DV, Arkin AP. Miller-Jensen K, et al. Among authors: dey ss. Trends Biotechnol. 2011 Oct;29(10):517-25. doi: 10.1016/j.tibtech.2011.05.004. Epub 2011 Jun 21. Trends Biotechnol. 2011. PMID: 21700350 Review.
Orthogonal control of expression mean and variance by epigenetic features at different genomic loci.
Dey SS, Foley JE, Limsirichai P, Schaffer DV, Arkin AP. Dey SS, et al. Mol Syst Biol. 2015 May 5;11(5):806. doi: 10.15252/msb.20145704. Mol Syst Biol. 2015. PMID: 25943345 Free PMC article.
Quantitative evaluation and optimization of co-drugging to improve anti-HIV latency therapy.
Wong VC, Fong LE, Adams NM, Xue Q, Dey SS, Miller-Jensen K. Wong VC, et al. Among authors: dey ss. Cell Mol Bioeng. 2014 Sep 1;7(3):320-333. doi: 10.1007/s12195-014-0336-9. Cell Mol Bioeng. 2014. PMID: 26191086 Free PMC article.
Chromatin accessibility at the HIV LTR promoter sets a threshold for NF-κB mediated viral gene expression.
Miller-Jensen K, Dey SS, Pham N, Foley JE, Arkin AP, Schaffer DV. Miller-Jensen K, et al. Among authors: dey ss. Integr Biol (Camb). 2012 Jun;4(6):661-71. doi: 10.1039/c2ib20009k. Epub 2012 May 3. Integr Biol (Camb). 2012. PMID: 22555315 Free PMC article.
Mutual information analysis reveals coevolving residues in Tat that compensate for two distinct functions in HIV-1 gene expression.
Dey SS, Xue Y, Joachimiak MP, Friedland GD, Burnett JC, Zhou Q, Arkin AP, Schaffer DV. Dey SS, et al. J Biol Chem. 2012 Mar 9;287(11):7945-55. doi: 10.1074/jbc.M111.302653. Epub 2012 Jan 17. J Biol Chem. 2012. PMID: 22253435 Free PMC article.
Efficient and cost-effective bacterial mRNA sequencing from low input samples through ribosomal RNA depletion.
Wangsanuwat C, Heom KA, Liu E, O'Malley MA, Dey SS. Wangsanuwat C, et al. Among authors: dey ss. BMC Genomics. 2020 Oct 16;21(1):717. doi: 10.1186/s12864-020-07134-4. BMC Genomics. 2020. PMID: 33066726 Free PMC article.
Simultaneous quantification of protein-DNA interactions and transcriptomes in single cells with scDam&T-seq.
Markodimitraki CM, Rang FJ, Rooijers K, de Vries SS, Chialastri A, de Luca KL, Lochs SJA, Mooijman D, Dey SS, Kind J. Markodimitraki CM, et al. Among authors: dey ss. Nat Protoc. 2020 Jun;15(6):1922-1953. doi: 10.1038/s41596-020-0314-8. Epub 2020 Apr 29. Nat Protoc. 2020. PMID: 32350457 Free PMC article.
An Extended Culture System that Supports Human Primordial Germ Cell-like Cell Survival and Initiation of DNA Methylation Erasure.
Gell JJ, Liu W, Sosa E, Chialastri A, Hancock G, Tao Y, Wamaitha SE, Bower G, Dey SS, Clark AT. Gell JJ, et al. Among authors: dey ss. Stem Cell Reports. 2020 Mar 10;14(3):433-446. doi: 10.1016/j.stemcr.2020.01.009. Epub 2020 Feb 13. Stem Cell Reports. 2020. PMID: 32059791 Free PMC article.
Control over single-cell distribution of G1 lengths by WNT governs pluripotency.
Jang J, Han D, Golkaram M, Audouard M, Liu G, Bridges D, Hellander S, Chialastri A, Dey SS, Petzold LR, Kosik KS. Jang J, et al. Among authors: dey ss. PLoS Biol. 2019 Sep 26;17(9):e3000453. doi: 10.1371/journal.pbio.3000453. eCollection 2019 Sep. PLoS Biol. 2019. PMID: 31557150 Free PMC article.
Heterosis and combining ability in cytoplasmic male sterile and doubled haploid based Brassica oleracea progenies and prediction of heterosis using microsatellites.
Singh S, Dey SS, Bhatia R, Kumar R, Sharma K, Behera TK. Singh S, et al. Among authors: dey ss. PLoS One. 2019 Aug 19;14(8):e0210772. doi: 10.1371/journal.pone.0210772. eCollection 2019. PLoS One. 2019. PMID: 31425498 Free PMC article.
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