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27 results
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ESpritz: accurate and fast prediction of protein disorder.
Walsh I, Martin AJ, Di Domenico T, Tosatto SC. Walsh I, et al. Among authors: di domenico t. Bioinformatics. 2012 Feb 15;28(4):503-9. doi: 10.1093/bioinformatics/btr682. Epub 2011 Dec 20. Bioinformatics. 2012. PMID: 22190692
RUBI: rapid proteomic-scale prediction of lysine ubiquitination and factors influencing predictor performance.
Walsh I, Di Domenico T, Tosatto SC. Walsh I, et al. Among authors: di domenico t. Amino Acids. 2014 Apr;46(4):853-62. doi: 10.1007/s00726-013-1645-3. Epub 2013 Dec 23. Amino Acids. 2014. PMID: 24363213
RepeatsDB: a database of tandem repeat protein structures.
Di Domenico T, Potenza E, Walsh I, Parra RG, Giollo M, Minervini G, Piovesan D, Ihsan A, Ferrari C, Kajava AV, Tosatto SC. Di Domenico T, et al. Nucleic Acids Res. 2014 Jan;42(Database issue):D352-7. doi: 10.1093/nar/gkt1175. Epub 2013 Dec 5. Nucleic Acids Res. 2014. PMID: 24311564 Free PMC article.
MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins.
Potenza E, Di Domenico T, Walsh I, Tosatto SC. Potenza E, et al. Among authors: di domenico t. Nucleic Acids Res. 2015 Jan;43(Database issue):D315-20. doi: 10.1093/nar/gku982. Epub 2014 Oct 31. Nucleic Acids Res. 2015. PMID: 25361972 Free PMC article.
Comprehensive large-scale assessment of intrinsic protein disorder.
Walsh I, Giollo M, Di Domenico T, Ferrari C, Zimmermann O, Tosatto SC. Walsh I, et al. Among authors: di domenico t. Bioinformatics. 2015 Jan 15;31(2):201-8. doi: 10.1093/bioinformatics/btu625. Epub 2014 Sep 21. Bioinformatics. 2015. PMID: 25246432
Analysis and consensus of currently available intrinsic protein disorder annotation sources in the MobiDB database.
Di Domenico T, Walsh I, Tosatto SC. Di Domenico T, et al. BMC Bioinformatics. 2013;14 Suppl 7(Suppl 7):S3. doi: 10.1186/1471-2105-14-S7-S3. Epub 2013 Apr 22. BMC Bioinformatics. 2013. PMID: 23815411 Free PMC article.
RAPHAEL: recognition, periodicity and insertion assignment of solenoid protein structures.
Walsh I, Sirocco FG, Minervini G, Di Domenico T, Ferrari C, Tosatto SC. Walsh I, et al. Among authors: di domenico t. Bioinformatics. 2012 Dec 15;28(24):3257-64. doi: 10.1093/bioinformatics/bts550. Epub 2012 Sep 8. Bioinformatics. 2012. PMID: 22962341
MobiDB: a comprehensive database of intrinsic protein disorder annotations.
Di Domenico T, Walsh I, Martin AJ, Tosatto SC. Di Domenico T, et al. Bioinformatics. 2012 Aug 1;28(15):2080-1. doi: 10.1093/bioinformatics/bts327. Epub 2012 Jun 1. Bioinformatics. 2012. PMID: 22661649
RING: networking interacting residues, evolutionary information and energetics in protein structures.
Martin AJ, Vidotto M, Boscariol F, Di Domenico T, Walsh I, Tosatto SC. Martin AJ, et al. Among authors: di domenico t. Bioinformatics. 2011 Jul 15;27(14):2003-5. doi: 10.1093/bioinformatics/btr191. Epub 2011 Apr 14. Bioinformatics. 2011. PMID: 21493660
CSpritz: accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs.
Walsh I, Martin AJ, Di Domenico T, Vullo A, Pollastri G, Tosatto SC. Walsh I, et al. Among authors: di domenico t. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W190-6. doi: 10.1093/nar/gkr411. Epub 2011 Jun 6. Nucleic Acids Res. 2011. PMID: 21646342 Free PMC article.
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