DiMaio F - Search Results

1

RosettaES: a sampling strategy enabling automated interpretation of difficult cryo-EM maps.

Frenz B, Walls AC, Egelman EH, Veesler D, DiMaio F. Frenz B, et al. Among authors: dimaio f. Nat Methods. 2017 Aug;14(8):797-800. doi: 10.1038/nmeth.4340. Epub 2017 Jun 19. Nat Methods. 2017. PMID: 28628127 Free PMC article.

2

Refinement of protein structures into low-resolution density maps using rosetta.

DiMaio F, Tyka MD, Baker ML, Chiu W, Baker D. DiMaio F, et al. J Mol Biol. 2009 Sep 11;392(1):181-90. doi: 10.1016/j.jmb.2009.07.008. Epub 2009 Jul 8. J Mol Biol. 2009. PMID: 19596339 Free PMC article.

3

Analyses of subnanometer resolution cryo-EM density maps.

Baker ML, Baker MR, Hryc CF, Dimaio F. Baker ML, et al. Among authors: dimaio f. Methods Enzymol. 2010;483:1-29. doi: 10.1016/S0076-6879(10)83001-0. Methods Enzymol. 2010. PMID: 20888467 Free PMC article.

4

Improved molecular replacement by density- and energy-guided protein structure optimization.

DiMaio F, Terwilliger TC, Read RJ, Wlodawer A, Oberdorfer G, Wagner U, Valkov E, Alon A, Fass D, Axelrod HL, Das D, Vorobiev SM, Iwaï H, Pokkuluri PR, Baker D. DiMaio F, et al. Nature. 2011 May 26;473(7348):540-3. doi: 10.1038/nature09964. Epub 2011 May 1. Nature. 2011. PMID: 21532589 Free PMC article.

5

Cryo-EM model validation using independent map reconstructions.

DiMaio F, Zhang J, Chiu W, Baker D. DiMaio F, et al. Protein Sci. 2013 Jun;22(6):865-8. doi: 10.1002/pro.2267. Protein Sci. 2013. PMID: 23592445 Free PMC article.

6

Improved low-resolution crystallographic refinement with Phenix and Rosetta.

DiMaio F, Echols N, Headd JJ, Terwilliger TC, Adams PD, Baker D. DiMaio F, et al. Nat Methods. 2013 Nov;10(11):1102-4. doi: 10.1038/nmeth.2648. Epub 2013 Sep 29. Nat Methods. 2013. PMID: 24076763 Free PMC article.

7

Structural plasticity of helical nanotubes based on coiled-coil assemblies.

Egelman EH, Xu C, DiMaio F, Magnotti E, Modlin C, Yu X, Wright E, Baker D, Conticello VP. Egelman EH, et al. Among authors: dimaio f. Structure. 2015 Feb 3;23(2):280-9. doi: 10.1016/j.str.2014.12.008. Epub 2015 Jan 22. Structure. 2015. PMID: 25620001 Free PMC article.

8

De novo protein structure determination from near-atomic-resolution cryo-EM maps.

Wang RY, Kudryashev M, Li X, Egelman EH, Basler M, Cheng Y, Baker D, DiMaio F. Wang RY, et al. Among authors: dimaio f. Nat Methods. 2015 Apr;12(4):335-8. doi: 10.1038/nmeth.3287. Epub 2015 Feb 23. Nat Methods. 2015. PMID: 25707029 Free PMC article.

9

Atomic-accuracy models from 4.5-Å cryo-electron microscopy data with density-guided iterative local refinement.

DiMaio F, Song Y, Li X, Brunner MJ, Xu C, Conticello V, Egelman E, Marlovits T, Cheng Y, Baker D. DiMaio F, et al. Nat Methods. 2015 Apr;12(4):361-365. doi: 10.1038/nmeth.3286. Epub 2015 Feb 23. Nat Methods. 2015. PMID: 25707030 Free PMC article.

10

Structure of the type VI secretion system contractile sheath.

Kudryashev M, Wang RY, Brackmann M, Scherer S, Maier T, Baker D, DiMaio F, Stahlberg H, Egelman EH, Basler M. Kudryashev M, et al. Among authors: dimaio f. Cell. 2015 Feb 26;160(5):952-962. doi: 10.1016/j.cell.2015.01.037. Cell. 2015. PMID: 25723169 Free PMC article.

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