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OutbreakTools: a new platform for disease outbreak analysis using the R software.
Jombart T, Aanensen DM, Baguelin M, Birrell P, Cauchemez S, Camacho A, Colijn C, Collins C, Cori A, Didelot X, Fraser C, Frost S, Hens N, Hugues J, Höhle M, Opatowski L, Rambaut A, Ratmann O, Soubeyrand S, Suchard MA, Wallinga J, Ypma R, Ferguson N. Jombart T, et al. Among authors: didelot x. Epidemics. 2014 Jun;7(100):28-34. doi: 10.1016/j.epidem.2014.04.003. Epub 2014 Apr 18. Epidemics. 2014. PMID: 24928667 Free PMC article.
Whole-genome sequencing to determine transmission of Neisseria gonorrhoeae: an observational study.
De Silva D, Peters J, Cole K, Cole MJ, Cresswell F, Dean G, Dave J, Thomas DR, Foster K, Waldram A, Wilson DJ, Didelot X, Grad YH, Crook DW, Peto TE, Walker AS, Paul J, Eyre DW. De Silva D, et al. Among authors: didelot x. Lancet Infect Dis. 2016 Nov;16(11):1295-1303. doi: 10.1016/S1473-3099(16)30157-8. Epub 2016 Jul 12. Lancet Infect Dis. 2016. PMID: 27427203 Free PMC article.
Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.
Ratmann O, Hodcroft EB, Pickles M, Cori A, Hall M, Lycett S, Colijn C, Dearlove B, Didelot X, Frost S, Hossain AS, Joy JB, Kendall M, Kühnert D, Leventhal GE, Liang R, Plazzotta G, Poon AF, Rasmussen DA, Stadler T, Volz E, Weis C, Leigh Brown AJ, Fraser C; PANGEA-HIV Consortium. Ratmann O, et al. Among authors: didelot x. Mol Biol Evol. 2017 Jan;34(1):185-203. doi: 10.1093/molbev/msw217. Epub 2016 Oct 7. Mol Biol Evol. 2017. PMID: 28053012 Free PMC article.
Testing for gonorrhoea should routinely include the pharynx.
Whittles LK, Didelot X, Grad YH, White PJ. Whittles LK, et al. Among authors: didelot x. Lancet Infect Dis. 2018 Jul;18(7):716-717. doi: 10.1016/S1473-3099(18)30341-4. Lancet Infect Dis. 2018. PMID: 29976520 Free PMC article. No abstract available.
Using rapid point-of-care tests to inform antibiotic choice to mitigate drug resistance in gonorrhoea.
Vegvari C, Grad YH, White PJ, Didelot X, Whittles LK, Scangarella-Oman NE, Mitrani-Gold FS, Dumont E, Perry CR, Gilchrist K, Hossain M, Mortimer TD, Anderson RM, Gardiner D. Vegvari C, et al. Among authors: didelot x. Euro Surveill. 2020 Oct;25(43):1900210. doi: 10.2807/1560-7917.ES.2020.25.43.1900210. Euro Surveill. 2020. PMID: 33124551 Free PMC article.
Emerging phylogenetic structure of the SARS-CoV-2 pandemic.
Fountain-Jones NM, Appaw RC, Carver S, Didelot X, Volz E, Charleston M. Fountain-Jones NM, et al. Among authors: didelot x. Virus Evol. 2020 Nov 10;6(2):veaa082. doi: 10.1093/ve/veaa082. eCollection 2020 Jul. Virus Evol. 2020. PMID: 33335743 Free PMC article.
173 results