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Enhanced detection of RNA modifications and read mapping with high-accuracy nanopore RNA basecalling models.
Genome Res. 2024 Nov 20;34(11):1865-1877. doi: 10.1101/gr.278849.123.
Genome Res. 2024.
PMID: 39271295
RNA Pol II-dependent transcription efficiency fine-tunes A-to-I editing levels.
Szabo B, Mandl TC, Woldrich B, Diensthuber G, Martin D, Jantsch MF, Licht K.
Szabo B, et al. Among authors: diensthuber g.
Genome Res. 2024 Mar 20;34(2):231-242. doi: 10.1101/gr.277686.123.
Genome Res. 2024.
PMID: 38471738
Free PMC article.
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Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing.
Begik O, Diensthuber G, Liu H, Delgado-Tejedor A, Kontur C, Niazi AM, Valen E, Giraldez AJ, Beaudoin JD, Mattick JS, Novoa EM.
Begik O, et al. Among authors: diensthuber g.
Nat Methods. 2023 Jan;20(1):75-85. doi: 10.1038/s41592-022-01714-w. Epub 2022 Dec 19.
Nat Methods. 2023.
PMID: 36536091
Free PMC article.
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