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AllergenFP: allergenicity prediction by descriptor fingerprints.
Dimitrov I, Naneva L, Doytchinova I, Bangov I. Dimitrov I, et al. Bioinformatics. 2014 Mar 15;30(6):846-51. doi: 10.1093/bioinformatics/btt619. Epub 2013 Oct 27. Bioinformatics. 2014. PMID: 24167156
HLA-DP2 binding prediction by molecular dynamics simulations.
Doytchinova I, Petkov P, Dimitrov I, Atanasova M, Flower DR. Doytchinova I, et al. Among authors: dimitrov i. Protein Sci. 2011 Nov;20(11):1918-28. doi: 10.1002/pro.732. Epub 2011 Sep 27. Protein Sci. 2011. PMID: 21898654 Free PMC article.
MHC proteins are divided into Class I and Class II. Human MHC Class II alleles are grouped into three loci: HLA-DP, HLA-DQ, and HLA-DR. ...
MHC proteins are divided into Class I and Class II. Human MHC Class II alleles are grouped into three loci: HLA-DP, HLA-DQ, and HLA-D …
Peptide Binding Prediction to Five Most Frequent HLA-DQ Proteins - a Proteochemometric Approach.
Dimitrov I, Doytchinova I. Dimitrov I, et al. Mol Inform. 2015 Jun;34(6-7):467-76. doi: 10.1002/minf.201400150. Epub 2015 May 27. Mol Inform. 2015. PMID: 27490390
Proteochemometrics-Based Prediction of Peptide Binding to HLA-DP Proteins.
Yordanov V, Dimitrov I, Doytchinova I. Yordanov V, et al. Among authors: dimitrov i. J Chem Inf Model. 2018 Feb 26;58(2):297-304. doi: 10.1021/acs.jcim.7b00026. Epub 2017 Aug 2. J Chem Inf Model. 2018. PMID: 28719212
A Cohesive and Integrated Platform for Immunogenicity Prediction.
Dimitrov I, Atanasova M, Patronov A, Flower DR, Doytchinova I. Dimitrov I, et al. Methods Mol Biol. 2016;1404:761-70. doi: 10.1007/978-1-4939-3389-1_50. Methods Mol Biol. 2016. PMID: 27076336
Here, we present a cohesive platform for immunogenicity and MHC class I and/or II binding affinity prediction. The platform integrates three quasi-independent modular servers: VaxiJen, EpiJen, and EpiTOP. ...The protocol for immunogenicity prediction is demonstrated by sel …
Here, we present a cohesive platform for immunogenicity and MHC class I and/or II binding affinity prediction. The platform integrate …
Associations between Milk and Egg Allergens and the HLA-DRB1/DQ Polymorphism: A Bioinformatics Approach.
Dimitrov I, Doytchinova I. Dimitrov I, et al. Int Arch Allergy Immunol. 2016;169(1):33-9. doi: 10.1159/000444172. Epub 2016 Mar 9. Int Arch Allergy Immunol. 2016. PMID: 26953725
AllerTOP v.2--a server for in silico prediction of allergens.
Dimitrov I, Bangov I, Flower DR, Doytchinova I. Dimitrov I, et al. J Mol Model. 2014 Jun;20(6):2278. doi: 10.1007/s00894-014-2278-5. Epub 2014 May 31. J Mol Model. 2014. PMID: 24878803
Quantitative prediction of peptide binding to HLA-DP1 protein.
Ivanov S, Dimitrov I, Doytchinova I. Ivanov S, et al. Among authors: dimitrov i. IEEE/ACM Trans Comput Biol Bioinform. 2013 May-Jun;10(3):811-5. doi: 10.1109/TCBB.2013.78. IEEE/ACM Trans Comput Biol Bioinform. 2013. PMID: 24091413
AllerTOP--a server for in silico prediction of allergens.
Dimitrov I, Flower DR, Doytchinova I. Dimitrov I, et al. BMC Bioinformatics. 2013;14 Suppl 6(Suppl 6):S4. doi: 10.1186/1471-2105-14-S6-S4. Epub 2013 Apr 17. BMC Bioinformatics. 2013. PMID: 23735058 Free PMC article.
EpiDOCK: a molecular docking-based tool for MHC class II binding prediction.
Atanasova M, Patronov A, Dimitrov I, Flower DR, Doytchinova I. Atanasova M, et al. Among authors: dimitrov i. Protein Eng Des Sel. 2013 Oct;26(10):631-4. doi: 10.1093/protein/gzt018. Epub 2013 May 9. Protein Eng Des Sel. 2013. PMID: 23661105
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