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Inferring TF activation order in time series scRNA-Seq studies.
Lin C, Ding J, Bar-Joseph Z. Lin C, et al. Among authors: ding j. PLoS Comput Biol. 2020 Feb 18;16(2):e1007644. doi: 10.1371/journal.pcbi.1007644. eCollection 2020 Feb. PLoS Comput Biol. 2020. PMID: 32069291 Free PMC article.
Temporal modelling using single-cell transcriptomics.
Ding J, Sharon N, Bar-Joseph Z. Ding J, et al. Nat Rev Genet. 2022 Jun;23(6):355-368. doi: 10.1038/s41576-021-00444-7. Epub 2022 Jan 31. Nat Rev Genet. 2022. PMID: 35102309 Free PMC article. Review.
iDREM: Interactive visualization of dynamic regulatory networks.
Ding J, Hagood JS, Ambalavanan N, Kaminski N, Bar-Joseph Z. Ding J, et al. PLoS Comput Biol. 2018 Mar 14;14(3):e1006019. doi: 10.1371/journal.pcbi.1006019. eCollection 2018 Mar. PLoS Comput Biol. 2018. PMID: 29538379 Free PMC article.
Interactive single-cell data analysis using Cellar.
Hasanaj E, Wang J, Sarathi A, Ding J, Bar-Joseph Z. Hasanaj E, et al. Among authors: ding j. Nat Commun. 2022 Apr 14;13(1):1998. doi: 10.1038/s41467-022-29744-0. Nat Commun. 2022. PMID: 35422041 Free PMC article.
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