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12,115 results
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A hybridization-based approach for quantitative and low-bias single-stranded DNA ligation.
Kwok CK, Ding Y, Sherlock ME, Assmann SM, Bevilacqua PC. Kwok CK, et al. Among authors: ding y. Anal Biochem. 2013 Apr 15;435(2):181-6. doi: 10.1016/j.ab.2013.01.008. Epub 2013 Jan 31. Anal Biochem. 2013. PMID: 23399535
In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features.
Ding Y, Tang Y, Kwok CK, Zhang Y, Bevilacqua PC, Assmann SM. Ding Y, et al. Nature. 2014 Jan 30;505(7485):696-700. doi: 10.1038/nature12756. Epub 2013 Nov 24. Nature. 2014. PMID: 24270811
Determination of in vivo RNA structure in low-abundance transcripts.
Kwok CK, Ding Y, Tang Y, Assmann SM, Bevilacqua PC. Kwok CK, et al. Among authors: ding y. Nat Commun. 2013;4:2971. doi: 10.1038/ncomms3971. Nat Commun. 2013. PMID: 24336128
A stable RNA G-quadruplex within the 5'-UTR of Arabidopsis thaliana ATR mRNA inhibits translation.
Kwok CK, Ding Y, Shahid S, Assmann SM, Bevilacqua PC. Kwok CK, et al. Among authors: ding y. Biochem J. 2015 Apr 1;467(1):91-102. doi: 10.1042/BJ20141063. Biochem J. 2015. PMID: 25793418
StructureFold: genome-wide RNA secondary structure mapping and reconstruction in vivo.
Tang Y, Bouvier E, Kwok CK, Ding Y, Nekrutenko A, Bevilacqua PC, Assmann SM. Tang Y, et al. Among authors: ding y. Bioinformatics. 2015 Aug 15;31(16):2668-75. doi: 10.1093/bioinformatics/btv213. Epub 2015 Apr 16. Bioinformatics. 2015. PMID: 25886980 Free PMC article.
Genome-wide profiling of in vivo RNA structure at single-nucleotide resolution using structure-seq.
Ding Y, Kwok CK, Tang Y, Bevilacqua PC, Assmann SM. Ding Y, et al. Nat Protoc. 2015 Jul;10(7):1050-66. doi: 10.1038/nprot.2015.064. Epub 2015 Jun 18. Nat Protoc. 2015. PMID: 26086407
RNA G-quadruplex structures exist and function in vivo in plants.
Yang X, Cheema J, Zhang Y, Deng H, Duncan S, Umar MI, Zhao J, Liu Q, Cao X, Kwok CK, Ding Y. Yang X, et al. Among authors: ding y. Genome Biol. 2020 Sep 1;21(1):226. doi: 10.1186/s13059-020-02142-9. Genome Biol. 2020. PMID: 32873317 Free PMC article.
FoldAtlas: a repository for genome-wide RNA structure probing data.
Norris M, Kwok CK, Cheema J, Hartley M, Morris RJ, Aviran S, Ding Y. Norris M, et al. Among authors: ding y. Bioinformatics. 2017 Jan 15;33(2):306-308. doi: 10.1093/bioinformatics/btw611. Epub 2016 Sep 22. Bioinformatics. 2017. PMID: 27663500 Free PMC article.
Positioning the nodule, the hormone dictum.
Ding Y, Oldroyd GE. Ding Y, et al. Plant Signal Behav. 2009 Feb;4(2):89-93. doi: 10.4161/psb.4.2.7693. Plant Signal Behav. 2009. PMID: 19649179 Free PMC article. Review.
Rice In Vivo RNA Structurome Reveals RNA Secondary Structure Conservation and Divergence in Plants.
Deng H, Cheema J, Zhang H, Woolfenden H, Norris M, Liu Z, Liu Q, Yang X, Yang M, Deng X, Cao X, Ding Y. Deng H, et al. Among authors: ding y. Mol Plant. 2018 Apr 2;11(4):607-622. doi: 10.1016/j.molp.2018.01.008. Epub 2018 Feb 1. Mol Plant. 2018. PMID: 29409859 Free PMC article.
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