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Combining de novo and reference-guided assembly with scaffold_builder.
Silva GG, Dutilh BE, Matthews TD, Elkins K, Schmieder R, Dinsdale EA, Edwards RA. Silva GG, et al. Among authors: dinsdale ea. Source Code Biol Med. 2013 Nov 22;8(1):23. doi: 10.1186/1751-0473-8-23. Source Code Biol Med. 2013. PMID: 24267787 Free PMC article.
Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions.
Dutilh BE, Thompson CC, Vicente AC, Marin MA, Lee C, Silva GG, Schmieder R, Andrade BG, Chimetto L, Cuevas D, Garza DR, Okeke IN, Aboderin AO, Spangler J, Ross T, Dinsdale EA, Thompson FL, Harkins TT, Edwards RA. Dutilh BE, et al. Among authors: dinsdale ea. BMC Genomics. 2014 Aug 5;15(1):654. doi: 10.1186/1471-2164-15-654. BMC Genomics. 2014. PMID: 25096633 Free PMC article.
The skin microbiome of elasmobranchs follows phylosymbiosis, but in teleost fishes, the microbiomes converge.
Doane MP, Morris MM, Papudeshi B, Allen L, Pande D, Haggerty JM, Johri S, Turnlund AC, Peterson M, Kacev D, Nosal A, Ramirez D, Hovel K, Ledbetter J, Alker A, Avalos J, Baker K, Bhide S, Billings E, Byrum S, Clemens M, Demery AJ, Lima LFO, Gomez O, Gutierrez O, Hinton S, Kieu D, Kim A, Loaiza R, Martinez A, McGhee J, Nguyen K, Parlan S, Pham A, Price-Waldman R, Edwards RA, Dinsdale EA. Doane MP, et al. Among authors: dinsdale ea. Microbiome. 2020 Jun 13;8(1):93. doi: 10.1186/s40168-020-00840-x. Microbiome. 2020. PMID: 32534596 Free PMC article.
Oxygen minimum zones harbour novel viral communities with low diversity.
Cassman N, Prieto-Davó A, Walsh K, Silva GG, Angly F, Akhter S, Barott K, Busch J, McDole T, Haggerty JM, Willner D, Alarcón G, Ulloa O, DeLong EF, Dutilh BE, Rohwer F, Dinsdale EA. Cassman N, et al. Among authors: dinsdale ea. Environ Microbiol. 2012 Nov;14(11):3043-65. doi: 10.1111/j.1462-2920.2012.02891.x. Epub 2012 Oct 5. Environ Microbiol. 2012. PMID: 23039259
Microbial ecology of four coral atolls in the Northern Line Islands.
Dinsdale EA, Pantos O, Smriga S, Edwards RA, Angly F, Wegley L, Hatay M, Hall D, Brown E, Haynes M, Krause L, Sala E, Sandin SA, Thurber RV, Willis BL, Azam F, Knowlton N, Rohwer F. Dinsdale EA, et al. PLoS One. 2008 Feb 27;3(2):e1584. doi: 10.1371/journal.pone.0001584. PLoS One. 2008. PMID: 18301735 Free PMC article.
69 results