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Response to Comment by Faurby, Werdelin and Svenning.
O'Brien SJ, Koepfli KP, Eizirik E, Johnson W, Driscoll C, Antunes A, Schmidt-Kuntzel A, Marker L, Dobrynin P. O'Brien SJ, et al. Among authors: dobrynin p. Genome Biol. 2016 May 5;17:90. doi: 10.1186/s13059-016-0942-z. Genome Biol. 2016. PMID: 27150130 Free PMC article. No abstract available.
Genome-wide Mycobacterium tuberculosis variation (GMTV) database: a new tool for integrating sequence variations and epidemiology.
Chernyaeva EN, Shulgina MV, Rotkevich MS, Dobrynin PV, Simonov SA, Shitikov EA, Ischenko DS, Karpova IY, Kostryukova ES, Ilina EN, Govorun VM, Zhuravlev VY, Manicheva OA, Yablonsky PK, Isaeva YD, Nosova EY, Mokrousov IV, Vyazovaya AA, Narvskaya OV, Lapidus AL, O'Brien SJ. Chernyaeva EN, et al. BMC Genomics. 2014 Apr 25;15:308. doi: 10.1186/1471-2164-15-308. BMC Genomics. 2014. PMID: 24767249 Free PMC article.
Annotated features of domestic cat - Felis catus genome.
Tamazian G, Simonov S, Dobrynin P, Makunin A, Logachev A, Komissarov A, Shevchenko A, Brukhin V, Cherkasov N, Svitin A, Koepfli KP, Pontius J, Driscoll CA, Blackistone K, Barr C, Goldman D, Antunes A, Quilez J, Lorente-Galdos B, Alkan C, Marques-Bonet T, Menotti-Raymond M, David VA, Narfström K, O'Brien SJ. Tamazian G, et al. Among authors: dobrynin p. Gigascience. 2014 Aug 5;3:13. doi: 10.1186/2047-217X-3-13. eCollection 2014. Gigascience. 2014. PMID: 25143822 Free PMC article.
GWATCH: a web platform for automated gene association discovery analysis.
Svitin A, Malov S, Cherkasov N, Geerts P, Rotkevich M, Dobrynin P, Shevchenko A, Guan L, Troyer J, Hendrickson S, Dilks HH, Oleksyk TK, Donfield S, Gomperts E, Jabs DA, Sezgin E, Van Natta M, Harrigan PR, Brumme ZL, O'Brien SJ. Svitin A, et al. Among authors: dobrynin p. Gigascience. 2014 Nov 5;3:18. doi: 10.1186/2047-217X-3-18. eCollection 2014. Gigascience. 2014. PMID: 25374661 Free PMC article.
Genome-wide Evidence Reveals that African and Eurasian Golden Jackals Are Distinct Species.
Koepfli KP, Pollinger J, Godinho R, Robinson J, Lea A, Hendricks S, Schweizer RM, Thalmann O, Silva P, Fan Z, Yurchenko AA, Dobrynin P, Makunin A, Cahill JA, Shapiro B, Álvares F, Brito JC, Geffen E, Leonard JA, Helgen KM, Johnson WE, O'Brien SJ, Van Valkenburgh B, Wayne RK. Koepfli KP, et al. Among authors: dobrynin p. Curr Biol. 2015 Aug 17;25(16):2158-65. doi: 10.1016/j.cub.2015.06.060. Epub 2015 Jul 30. Curr Biol. 2015. PMID: 26234211 Free article.
Genomic legacy of the African cheetah, Acinonyx jubatus.
Dobrynin P, Liu S, Tamazian G, Xiong Z, Yurchenko AA, Krasheninnikova K, Kliver S, Schmidt-Küntzel A, Koepfli KP, Johnson W, Kuderna LF, García-Pérez R, Manuel Md, Godinez R, Komissarov A, Makunin A, Brukhin V, Qiu W, Zhou L, Li F, Yi J, Driscoll C, Antunes A, Oleksyk TK, Eizirik E, Perelman P, Roelke M, Wildt D, Diekhans M, Marques-Bonet T, Marker L, Bhak J, Wang J, Zhang G, O'Brien SJ. Dobrynin P, et al. Genome Biol. 2015 Dec 10;16:277. doi: 10.1186/s13059-015-0837-4. Genome Biol. 2015. PMID: 26653294 Free PMC article.
Mitogenomic sequences support a north-south subspecies subdivision within Solenodon paradoxus.
Brandt AL, Grigorev K, Afanador-Hernández YM, Paulino LA, Murphy WJ, Núñez A, Komissarov A, Brandt JR, Dobrynin P, Hernández-Martich JD, María R, O'Brien SJ, Rodríguez LE, Martínez-Cruzado JC, Oleksyk TK, Roca AL. Brandt AL, et al. Among authors: dobrynin p. Mitochondrial DNA A DNA Mapp Seq Anal. 2017 Sep;28(5):662-670. doi: 10.3109/24701394.2016.1167891. Epub 2016 Apr 20. Mitochondrial DNA A DNA Mapp Seq Anal. 2017. PMID: 27159724
Pangolin genomes and the evolution of mammalian scales and immunity.
Choo SW, Rayko M, Tan TK, Hari R, Komissarov A, Wee WY, Yurchenko AA, Kliver S, Tamazian G, Antunes A, Wilson RK, Warren WC, Koepfli KP, Minx P, Krasheninnikova K, Kotze A, Dalton DL, Vermaak E, Paterson IC, Dobrynin P, Sitam FT, Rovie-Ryan JJ, Johnson WE, Yusoff AM, Luo SJ, Karuppannan KV, Fang G, Zheng D, Gerstein MB, Lipovich L, O'Brien SJ, Wong GJ. Choo SW, et al. Among authors: dobrynin p. Genome Res. 2016 Oct;26(10):1312-1322. doi: 10.1101/gr.203521.115. Epub 2016 Aug 10. Genome Res. 2016. PMID: 27510566 Free PMC article.
PGD: a pangolin genome hub for the research community.
Tan TK, Tan KY, Hari R, Mohamed Yusoff A, Wong GJ, Siow CC, Mutha NV, Rayko M, Komissarov A, Dobrynin P, Krasheninnikova K, Tamazian G, Paterson IC, Warren WC, Johnson WE, O'Brien SJ, Choo SW. Tan TK, et al. Among authors: dobrynin p. Database (Oxford). 2016 Sep 11;2016:baw063. doi: 10.1093/database/baw063. Print 2016. Database (Oxford). 2016. PMID: 27616775 Free PMC article.
37 results