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biochem4j: Integrated and extensible biochemical knowledge through graph databases.
Swainston N, Batista-Navarro R, Carbonell P, Dobson PD, Dunstan M, Jervis AJ, Vinaixa M, Williams AR, Ananiadou S, Faulon JL, Mendes P, Kell DB, Scrutton NS, Breitling R. Swainston N, et al. Among authors: dobson pd. PLoS One. 2017 Jul 14;12(7):e0179130. doi: 10.1371/journal.pone.0179130. eCollection 2017. PLoS One. 2017. PMID: 28708831 Free PMC article.
Recon 2.2: from reconstruction to model of human metabolism.
Swainston N, Smallbone K, Hefzi H, Dobson PD, Brewer J, Hanscho M, Zielinski DC, Ang KS, Gardiner NJ, Gutierrez JM, Kyriakopoulos S, Lakshmanan M, Li S, Liu JK, Martínez VS, Orellana CA, Quek LE, Thomas A, Zanghellini J, Borth N, Lee DY, Nielsen LK, Kell DB, Lewis NE, Mendes P. Swainston N, et al. Among authors: dobson pd. Metabolomics. 2016;12:109. doi: 10.1007/s11306-016-1051-4. Epub 2016 Jun 7. Metabolomics. 2016. PMID: 27358602 Free PMC article.
Text mining meets workflow: linking U-Compare with Taverna.
Kano Y, Dobson P, Nakanishi M, Tsujii J, Ananiadou S. Kano Y, et al. Bioinformatics. 2010 Oct 1;26(19):2486-7. doi: 10.1093/bioinformatics/btq464. Epub 2010 Aug 12. Bioinformatics. 2010. PMID: 20709690 Free PMC article.
Further developments towards a genome-scale metabolic model of yeast.
Dobson PD, Smallbone K, Jameson D, Simeonidis E, Lanthaler K, Pir P, Lu C, Swainston N, Dunn WB, Fisher P, Hull D, Brown M, Oshota O, Stanford NJ, Kell DB, King RD, Oliver SG, Stevens RD, Mendes P. Dobson PD, et al. BMC Syst Biol. 2010 Oct 28;4:145. doi: 10.1186/1752-0509-4-145. BMC Syst Biol. 2010. PMID: 21029416 Free PMC article.
25 results