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Improvements to the APBS biomolecular solvation software suite.
Protein Sci. 2018 Jan;27(1):112-128. doi: 10.1002/pro.3280. Epub 2017 Oct 24.
Protein Sci. 2018.
PMID: 28836357
Free PMC article.
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations.
Dolinsky TJ, Nielsen JE, McCammon JA, Baker NA.
Dolinsky TJ, et al.
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W665-7. doi: 10.1093/nar/gkh381.
Nucleic Acids Res. 2004.
PMID: 15215472
Free PMC article.
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PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations.
Dolinsky TJ, Czodrowski P, Li H, Nielsen JE, Jensen JH, Klebe G, Baker NA.
Dolinsky TJ, et al.
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W522-5. doi: 10.1093/nar/gkm276. Epub 2007 May 8.
Nucleic Acids Res. 2007.
PMID: 17488841
Free PMC article.
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Application of new multi-resolution methods for the comparison of biomolecular electrostatic properties in the absence of global structural similarity.
Zhang X, Bajaj CL, Kwon B, Dolinsky TJ, Nielsen JE, Baker NA.
Zhang X, et al. Among authors: dolinsky tj.
Multiscale Model Simul. 2006;5(4):1196-1213. doi: 10.1137/050647670.
Multiscale Model Simul. 2006.
PMID: 18841247
Free PMC article.
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SPrCY: comparison of structural predictions in the Saccharomyces cerevisiae genome.
Dolinsky TJ, Burgers PM, Karplus K, Baker NA.
Dolinsky TJ, et al.
Bioinformatics. 2004 Sep 22;20(14):2312-4. doi: 10.1093/bioinformatics/bth223. Epub 2004 Apr 1.
Bioinformatics. 2004.
PMID: 15059824
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