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19 results
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Viruses.STRING: A Virus-Host Protein-Protein Interaction Database.
Cook HV, Doncheva NT, Szklarczyk D, von Mering C, Jensen LJ. Cook HV, et al. Among authors: doncheva nt. Viruses. 2018 Sep 23;10(10):519. doi: 10.3390/v10100519. Viruses. 2018. PMID: 30249048 Free PMC article.
STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.
Szklarczyk D, Gable AL, Lyon D, Junge A, Wyder S, Huerta-Cepas J, Simonovic M, Doncheva NT, Morris JH, Bork P, Jensen LJ, Mering CV. Szklarczyk D, et al. Among authors: doncheva nt. Nucleic Acids Res. 2019 Jan 8;47(D1):D607-D613. doi: 10.1093/nar/gky1131. Nucleic Acids Res. 2019. PMID: 30476243 Free PMC article.
The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.
Szklarczyk D, Morris JH, Cook H, Kuhn M, Wyder S, Simonovic M, Santos A, Doncheva NT, Roth A, Bork P, Jensen LJ, von Mering C. Szklarczyk D, et al. Among authors: doncheva nt. Nucleic Acids Res. 2017 Jan 4;45(D1):D362-D368. doi: 10.1093/nar/gkw937. Epub 2016 Oct 18. Nucleic Acids Res. 2017. PMID: 27924014 Free PMC article.
NetworkPrioritizer: a versatile tool for network-based prioritization of candidate disease genes or other molecules.
Kacprowski T, Doncheva NT, Albrecht M. Kacprowski T, et al. Among authors: doncheva nt. Bioinformatics. 2013 Jun 1;29(11):1471-3. doi: 10.1093/bioinformatics/btt164. Epub 2013 Apr 16. Bioinformatics. 2013. PMID: 23595661 Free PMC article.
Analyzing and visualizing residue networks of protein structures.
Doncheva NT, Klein K, Domingues FS, Albrecht M. Doncheva NT, et al. Trends Biochem Sci. 2011 Apr;36(4):179-82. doi: 10.1016/j.tibs.2011.01.002. Epub 2011 Feb 21. Trends Biochem Sci. 2011. PMID: 21345680
Topological analysis and interactive visualization of biological networks and protein structures.
Doncheva NT, Assenov Y, Domingues FS, Albrecht M. Doncheva NT, et al. Nat Protoc. 2012 Mar 15;7(4):670-85. doi: 10.1038/nprot.2012.004. Nat Protoc. 2012. PMID: 22422314
Recent approaches to the prioritization of candidate disease genes.
Doncheva NT, Kacprowski T, Albrecht M. Doncheva NT, et al. Wiley Interdiscip Rev Syst Biol Med. 2012 Sep-Oct;4(5):429-42. doi: 10.1002/wsbm.1177. Epub 2012 Jun 11. Wiley Interdiscip Rev Syst Biol Med. 2012. PMID: 22689539 Review.
[No authors listed] [No authors listed] PMID: 26306185
Near-Neighbor Interactions in the NS3-4A Protease of HCV Impact Replicative Fitness of Drug-Resistant Viral Variants.
Doncheva NT, Domingues FS, McGivern DR, Shimakami T, Zeuzem S, Lengauer T, Lange CM, Albrecht M, Welsch C. Doncheva NT, et al. J Mol Biol. 2019 May 31;431(12):2354-2368. doi: 10.1016/j.jmb.2019.04.034. Epub 2019 Apr 30. J Mol Biol. 2019. PMID: 31051172 Free PMC article.
Integrative visual analysis of protein sequence mutations.
Doncheva NT, Klein K, Morris JH, Wybrow M, Domingues FS, Albrecht M. Doncheva NT, et al. BMC Proc. 2014 Aug 28;8(Suppl 2 Proceedings of the 3rd Annual Symposium on Biologica):S2. doi: 10.1186/1753-6561-8-S2-S2. eCollection 2014. BMC Proc. 2014. PMID: 25237389 Free PMC article.
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