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Microbial genomes: dealing with diversity.
Boucher Y, Nesbø CL, Doolittle WF. Boucher Y, et al. Among authors: doolittle wf. Curr Opin Microbiol. 2001 Jun;4(3):285-9. doi: 10.1016/s1369-5274(00)00204-6. Curr Opin Microbiol. 2001. PMID: 11378480 Review.
Intertwined evolutionary histories of marine Synechococcus and Prochlorococcus marinus.
Zhaxybayeva O, Doolittle WF, Papke RT, Gogarten JP. Zhaxybayeva O, et al. Among authors: doolittle wf. Genome Biol Evol. 2009 Sep 2;1:325-39. doi: 10.1093/gbe/evp032. Genome Biol Evol. 2009. PMID: 20333202 Free PMC article.
Actinorhodopsins: proteorhodopsin-like gene sequences found predominantly in non-marine environments.
Sharma AK, Zhaxybayeva O, Papke RT, Doolittle WF. Sharma AK, et al. Among authors: doolittle wf. Environ Microbiol. 2008 Apr;10(4):1039-56. doi: 10.1111/j.1462-2920.2007.01525.x. Epub 2008 Jan 24. Environ Microbiol. 2008. PMID: 18218036
Actinorhodopsin genes discovered in diverse freshwater habitats and among cultivated freshwater Actinobacteria.
Sharma AK, Sommerfeld K, Bullerjahn GS, Matteson AR, Wilhelm SW, Jezbera J, Brandt U, Doolittle WF, Hahn MW. Sharma AK, et al. Among authors: doolittle wf. ISME J. 2009 Jun;3(6):726-37. doi: 10.1038/ismej.2009.13. Epub 2009 Feb 26. ISME J. 2009. PMID: 19242530
Ancient lateral gene transfer in the evolution of Bdellovibrio bacteriovorus.
Gophna U, Charlebois RL, Doolittle WF. Gophna U, et al. Among authors: doolittle wf. Trends Microbiol. 2006 Feb;14(2):64-9. doi: 10.1016/j.tim.2005.12.008. Epub 2006 Jan 18. Trends Microbiol. 2006. PMID: 16413191
Phylogenetic analyses of cyanobacterial genomes: quantification of horizontal gene transfer events.
Zhaxybayeva O, Gogarten JP, Charlebois RL, Doolittle WF, Papke RT. Zhaxybayeva O, et al. Among authors: doolittle wf. Genome Res. 2006 Sep;16(9):1099-108. doi: 10.1101/gr.5322306. Epub 2006 Aug 9. Genome Res. 2006. PMID: 16899658 Free PMC article.
Genomics and the bacterial species problem.
Doolittle WF, Papke RT. Doolittle WF, et al. Genome Biol. 2006;7(9):116. doi: 10.1186/gb-2006-7-9-116. Genome Biol. 2006. PMID: 17020593 Free PMC article.
Lateral transfer of an EF-1alpha gene: origin and evolution of the large subunit of ATP sulfurylase in eubacteria.
Inagaki Y, Doolittle WF, Baldauf SL, Roger AJ. Inagaki Y, et al. Among authors: doolittle wf. Curr Biol. 2002 Apr 30;12(9):772-6. doi: 10.1016/s0960-9822(02)00816-3. Curr Biol. 2002. PMID: 12007424
Convergence and constraint in eukaryotic release factor 1 (eRF1) domain 1: the evolution of stop codon specificity.
Inagaki Y, Blouin C, Doolittle WF, Roger AJ. Inagaki Y, et al. Among authors: doolittle wf. Nucleic Acids Res. 2002 Jan 15;30(2):532-44. doi: 10.1093/nar/30.2.532. Nucleic Acids Res. 2002. PMID: 11788716 Free PMC article.
Novel syntaxin gene sequences from Giardia, Trypanosoma and algae: implications for the ancient evolution of the eukaryotic endomembrane system.
Dacks JB, Doolittle WF. Dacks JB, et al. Among authors: doolittle wf. J Cell Sci. 2002 Apr 15;115(Pt 8):1635-42. J Cell Sci. 2002. PMID: 11950882
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