Dopazo J - Search Results

1

Exploring the druggable space around the Fanconi anemia pathway using machine learning and mechanistic models.

Esteban-Medina M, Peña-Chilet M, Loucera C, Dopazo J. Esteban-Medina M, et al. Among authors: dopazo j. BMC Bioinformatics. 2019 Jul 2;20(1):370. doi: 10.1186/s12859-019-2969-0. BMC Bioinformatics. 2019. PMID: 31266445 Free PMC article.

2

Understanding disease mechanisms with models of signaling pathway activities.

Sebastian-Leon P, Vidal E, Minguez P, Conesa A, Tarazona S, Amadoz A, Armero C, Salavert F, Vidal-Puig A, Montaner D, Dopazo J. Sebastian-Leon P, et al. Among authors: dopazo j. BMC Syst Biol. 2014 Oct 25;8:121. doi: 10.1186/s12918-014-0121-3. BMC Syst Biol. 2014. PMID: 25344409 Free PMC article.

3

VISMapper: ultra-fast exhaustive cartography of viral insertion sites for gene therapy.

Juanes JM, Gallego A, Tárraga J, Chaves FJ, Marín-Garcia P, Medina I, Arnau V, Dopazo J. Juanes JM, et al. Among authors: dopazo j. BMC Bioinformatics. 2017 Sep 20;18(1):421. doi: 10.1186/s12859-017-1837-z. BMC Bioinformatics. 2017. PMID: 28931371 Free PMC article.

4

A comparison of mechanistic signaling pathway activity analysis methods.

Amadoz A, Hidalgo MR, Çubuk C, Carbonell-Caballero J, Dopazo J. Amadoz A, et al. Among authors: dopazo j. Brief Bioinform. 2019 Sep 27;20(5):1655-1668. doi: 10.1093/bib/bby040. Brief Bioinform. 2019. PMID: 29868818 Free PMC article. Review.

5

Pazopanib for treatment of advanced malignant and dedifferentiated solitary fibrous tumour: a multicentre, single-arm, phase 2 trial.

Martin-Broto J, Stacchiotti S, Lopez-Pousa A, Redondo A, Bernabeu D, de Alava E, Casali PG, Italiano A, Gutierrez A, Moura DS, Peña-Chilet M, Diaz-Martin J, Biscuola M, Taron M, Collini P, Ranchere-Vince D, Garcia Del Muro X, Grignani G, Dumont S, Martinez-Trufero J, Palmerini E, Hindi N, Sebio A, Dopazo J, Dei Tos AP, LeCesne A, Blay JY, Cruz J. Martin-Broto J, et al. Among authors: dopazo j. Lancet Oncol. 2019 Jan;20(1):134-144. doi: 10.1016/S1470-2045(18)30676-4. Epub 2018 Dec 18. Lancet Oncol. 2019. PMID: 30578023 Clinical Trial.

6

PyCellBase, an efficient python package for easy retrieval of biological data from heterogeneous sources.

Perez-Gil D, Lopez FJ, Dopazo J, Marin-Garcia P, Rendon A, Medina I. Perez-Gil D, et al. Among authors: dopazo j. BMC Bioinformatics. 2019 Mar 28;20(1):159. doi: 10.1186/s12859-019-2726-4. BMC Bioinformatics. 2019. PMID: 30922213 Free PMC article.

7

Antibiotic resistance and metabolic profiles as functional biomarkers that accurately predict the geographic origin of city metagenomics samples.

Casimiro-Soriguer CS, Loucera C, Perez Florido J, López-López D, Dopazo J. Casimiro-Soriguer CS, et al. Among authors: dopazo j. Biol Direct. 2019 Aug 20;14(1):15. doi: 10.1186/s13062-019-0246-9. Biol Direct. 2019. PMID: 31429791 Free PMC article.

8

Using mechanistic models for the clinical interpretation of complex genomic variation.

Peña-Chilet M, Esteban-Medina M, Falco MM, Rian K, Hidalgo MR, Loucera C, Dopazo J. Peña-Chilet M, et al. Among authors: dopazo j. Sci Rep. 2019 Dec 12;9(1):18937. doi: 10.1038/s41598-019-55454-7. Sci Rep. 2019. PMID: 31831811 Free PMC article.

9

Pazopanib for treatment of typical solitary fibrous tumours: a multicentre, single-arm, phase 2 trial.

Martin-Broto J, Cruz J, Penel N, Le Cesne A, Hindi N, Luna P, Moura DS, Bernabeu D, de Alava E, Lopez-Guerrero JA, Dopazo J, Peña-Chilet M, Gutierrez A, Collini P, Karanian M, Redondo A, Lopez-Pousa A, Grignani G, Diaz-Martin J, Marcilla D, Fernandez-Serra A, Gonzalez-Aguilera C, Casali PG, Blay JY, Stacchiotti S. Martin-Broto J, et al. Among authors: dopazo j. Lancet Oncol. 2020 Mar;21(3):456-466. doi: 10.1016/S1470-2045(19)30826-5. Epub 2020 Feb 14. Lancet Oncol. 2020. PMID: 32066540 Clinical Trial.

10

Mechanistic Models of Signaling Pathways Reveal the Drug Action Mechanisms behind Gender-Specific Gene Expression for Cancer Treatments.

Çubuk C, Can FE, Peña-Chilet M, Dopazo J. Çubuk C, et al. Among authors: dopazo j. Cells. 2020 Jun 29;9(7):1579. doi: 10.3390/cells9071579. Cells. 2020. PMID: 32610626 Free PMC article.

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