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AllergenFP: allergenicity prediction by descriptor fingerprints.
Dimitrov I, Naneva L, Doytchinova I, Bangov I. Dimitrov I, et al. Among authors: doytchinova i. Bioinformatics. 2014 Mar 15;30(6):846-51. doi: 10.1093/bioinformatics/btt619. Epub 2013 Oct 27. Bioinformatics. 2014. PMID: 24167156
Towards the in silico identification of class II restricted T-cell epitopes: a partial least squares iterative self-consistent algorithm for affinity prediction.
Doytchinova IA, Flower DR. Doytchinova IA, et al. Bioinformatics. 2003 Nov 22;19(17):2263-70. doi: 10.1093/bioinformatics/btg312. Bioinformatics. 2003. PMID: 14630655
Identifying candidate subunit vaccines using an alignment-independent method based on principal amino acid properties.
Doytchinova IA, Flower DR. Doytchinova IA, et al. Vaccine. 2007 Jan 15;25(5):856-66. doi: 10.1016/j.vaccine.2006.09.032. Epub 2006 Sep 28. Vaccine. 2007. PMID: 17045707
VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines.
Doytchinova IA, Flower DR. Doytchinova IA, et al. BMC Bioinformatics. 2007 Jan 5;8:4. doi: 10.1186/1471-2105-8-4. BMC Bioinformatics. 2007. PMID: 17207271 Free PMC article.
Peptide binding to the HLA-DRB1 supertype: a proteochemometrics analysis.
Dimitrov I, Garnev P, Flower DR, Doytchinova I. Dimitrov I, et al. Among authors: doytchinova i. Eur J Med Chem. 2010 Jan;45(1):236-43. doi: 10.1016/j.ejmech.2009.09.049. Epub 2009 Oct 13. Eur J Med Chem. 2010. PMID: 19896246
MHC Class II Binding Prediction-A Little Help from a Friend.
Dimitrov I, Garnev P, Flower DR, Doytchinova I. Dimitrov I, et al. Among authors: doytchinova i. J Biomed Biotechnol. 2010;2010:705821. doi: 10.1155/2010/705821. Epub 2010 May 20. J Biomed Biotechnol. 2010. PMID: 20508817 Free PMC article.
EpiTOP--a proteochemometric tool for MHC class II binding prediction.
Dimitrov I, Garnev P, Flower DR, Doytchinova I. Dimitrov I, et al. Among authors: doytchinova i. Bioinformatics. 2010 Aug 15;26(16):2066-8. doi: 10.1093/bioinformatics/btq324. Epub 2010 Jun 23. Bioinformatics. 2010. PMID: 20576624
HLA-DP2 binding prediction by molecular dynamics simulations.
Doytchinova I, Petkov P, Dimitrov I, Atanasova M, Flower DR. Doytchinova I, et al. Protein Sci. 2011 Nov;20(11):1918-28. doi: 10.1002/pro.732. Epub 2011 Sep 27. Protein Sci. 2011. PMID: 21898654 Free PMC article.
MHC proteins are divided into Class I and Class II. Human MHC Class II alleles are grouped into three loci: HLA-DP, HLA-DQ, and HLA-DR. ...
MHC proteins are divided into Class I and Class II. Human MHC Class II alleles are grouped into three loci: HLA-DP, HLA-DQ, and HLA-D …
Prediction of steady-state volume of distribution of acidic drugs by quantitative structure-pharmacokinetics relationships.
Zhivkova Z, Doytchinova I. Zhivkova Z, et al. Among authors: doytchinova i. J Pharm Sci. 2012 Mar;101(3):1253-66. doi: 10.1002/jps.22819. Epub 2011 Dec 13. J Pharm Sci. 2012. PMID: 22170307
Peptide binding to HLA-DP proteins at pH 5.0 and pH 7.0: a quantitative molecular docking study.
Patronov A, Dimitrov I, Flower DR, Doytchinova I. Patronov A, et al. Among authors: doytchinova i. BMC Struct Biol. 2012 Aug 5;12:20. doi: 10.1186/1472-6807-12-20. BMC Struct Biol. 2012. PMID: 22862845 Free PMC article.
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