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BEAST: Bayesian evolutionary analysis by sampling trees.
Drummond AJ, Rambaut A. Drummond AJ, et al. BMC Evol Biol. 2007 Nov 8;7:214. doi: 10.1186/1471-2148-7-214. BMC Evol Biol. 2007. PMID: 17996036 Free PMC article.
Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.
Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Meintjes P, Drummond A. Kearse M, et al. Bioinformatics. 2012 Jun 15;28(12):1647-9. doi: 10.1093/bioinformatics/bts199. Epub 2012 Apr 27. Bioinformatics. 2012. PMID: 22543367 Free PMC article.
The inference of stepwise changes in substitution rates using serial sequence samples.
Drummond A, Forsberg R, Rodrigo AG. Drummond A, et al. Mol Biol Evol. 2001 Jul;18(7):1365-71. doi: 10.1093/oxfordjournals.molbev.a003920. Mol Biol Evol. 2001. PMID: 11420374
The second is a new parameterization of the pairwise distance least-squares procedure used by Drummond and Rodrigo. The utility of these methods is demonstrated on a genealogy of HIV sequences obtained at five different sampling times from a single patient over a period of …
The second is a new parameterization of the pairwise distance least-squares procedure used by Drummond and Rodrigo. The utility of th …
Bayesian coestimation of phylogeny and sequence alignment.
Lunter G, Miklós I, Drummond A, Jensen JL, Hein J. Lunter G, et al. BMC Bioinformatics. 2005 Apr 1;6:83. doi: 10.1186/1471-2105-6-83. BMC Bioinformatics. 2005. PMID: 15804354 Free PMC article.
Inferring evolutionary rates using serially sampled sequences from several populations.
Rodrigo AG, Goode M, Forsberg R, Ross HA, Drummond A. Rodrigo AG, et al. Mol Biol Evol. 2003 Dec;20(12):2010-8. doi: 10.1093/molbev/msg215. Epub 2003 Aug 29. Mol Biol Evol. 2003. PMID: 12949147
Phylodynamic Model Adequacy Using Posterior Predictive Simulations.
Duchene S, Bouckaert R, Duchene DA, Stadler T, Drummond AJ. Duchene S, et al. Among authors: drummond aj. Syst Biol. 2019 Mar 1;68(2):358-364. doi: 10.1093/sysbio/syy048. Syst Biol. 2019. PMID: 29945220 Free PMC article.
Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10.
Suchard MA, Lemey P, Baele G, Ayres DL, Drummond AJ, Rambaut A. Suchard MA, et al. Among authors: drummond aj. Virus Evol. 2018 Jun 8;4(1):vey016. doi: 10.1093/ve/vey016. eCollection 2018 Jan. Virus Evol. 2018. PMID: 29942656 Free PMC article.
Inferring Ancestral Recombination Graphs from Bacterial Genomic Data.
Vaughan TG, Welch D, Drummond AJ, Biggs PJ, George T, French NP. Vaughan TG, et al. Genetics. 2017 Feb;205(2):857-870. doi: 10.1534/genetics.116.193425. Epub 2016 Dec 22. Genetics. 2017. PMID: 28007885 Free PMC article.
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