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MycoCosm portal: gearing up for 1000 fungal genomes.
Grigoriev IV, Nikitin R, Haridas S, Kuo A, Ohm R, Otillar R, Riley R, Salamov A, Zhao X, Korzeniewski F, Smirnova T, Nordberg H, Dubchak I, Shabalov I. Grigoriev IV, et al. Among authors: Dubchak I. Nucleic Acids Res. 2014 Jan;42(Database issue):D699-704. doi: 10.1093/nar/gkt1183. Epub 2013 Dec 1. Nucleic Acids Res. 2014. PMID: 24297253 Free PMC article.
Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus.
Rodionov DA, Novichkov PS, Stavrovskaya ED, Rodionova IA, Li X, Kazanov MD, Ravcheev DA, Gerasimova AV, Kazakov AE, Kovaleva GY, Permina EA, Laikova ON, Overbeek R, Romine MF, Fredrickson JK, Arkin AP, Dubchak I, Osterman AL, Gelfand MS. Rodionov DA, et al. Among authors: Dubchak I. BMC Genomics. 2011 Jun 15;12 Suppl 1(Suppl 1):S3. doi: 10.1186/1471-2164-12-S1-S3. BMC Genomics. 2011. PMID: 21810205 Free PMC article.
New family of tungstate-responsive transcriptional regulators in sulfate-reducing bacteria.
Kazakov AE, Rajeev L, Luning EG, Zane GM, Siddartha K, Rodionov DA, Dubchak I, Arkin AP, Wall JD, Mukhopadhyay A, Novichkov PS. Kazakov AE, et al. Among authors: Dubchak I. J Bacteriol. 2013 Oct;195(19):4466-75. doi: 10.1128/JB.00679-13. Epub 2013 Aug 2. J Bacteriol. 2013. PMID: 23913324 Free PMC article.
Comparative genomics of the dormancy regulons in mycobacteria.
Gerasimova A, Kazakov AE, Arkin AP, Dubchak I, Gelfand MS. Gerasimova A, et al. Among authors: Dubchak I. J Bacteriol. 2011 Jul;193(14):3446-52. doi: 10.1128/JB.00179-11. Epub 2011 May 20. J Bacteriol. 2011. PMID: 21602344 Free PMC article.
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