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295 results
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Visualizing genomic information across chromosomes with PhenoGram.
Wolfe D, Dudek S, Ritchie MD, Pendergrass SA. Wolfe D, et al. Among authors: dudek s. BioData Min. 2013 Oct 16;6(1):18. doi: 10.1186/1756-0381-6-18. BioData Min. 2013. PMID: 24131735 Free PMC article.
ATHENA: A knowledge-based hybrid backpropagation-grammatical evolution neural network algorithm for discovering epistasis among quantitative trait Loci.
Turner SD, Dudek SM, Ritchie MD. Turner SD, et al. BioData Min. 2010 Sep 27;3(1):5. doi: 10.1186/1756-0381-3-5. BioData Min. 2010. PMID: 20875103 Free PMC article.
Synthesis-View: visualization and interpretation of SNP association results for multi-cohort, multi-phenotype data and meta-analysis.
Pendergrass SA, Dudek SM, Crawford DC, Ritchie MD. Pendergrass SA, et al. BioData Min. 2010 Dec 16;3:10. doi: 10.1186/1756-0381-3-10. BioData Min. 2010. PMID: 21162740 Free PMC article.
Visually integrating and exploring high throughput Phenome-Wide Association Study (PheWAS) results using PheWAS-View.
Pendergrass SA, Dudek SM, Crawford DC, Ritchie MD. Pendergrass SA, et al. BioData Min. 2012 Jun 8;5(1):5. doi: 10.1186/1756-0381-5-5. BioData Min. 2012. PMID: 22682510 Free PMC article.
Phenome-wide association study (PheWAS) for detection of pleiotropy within the Population Architecture using Genomics and Epidemiology (PAGE) Network.
Pendergrass SA, Brown-Gentry K, Dudek S, Frase A, Torstenson ES, Goodloe R, Ambite JL, Avery CL, Buyske S, Bůžková P, Deelman E, Fesinmeyer MD, Haiman CA, Heiss G, Hindorff LA, Hsu CN, Jackson RD, Kooperberg C, Le Marchand L, Lin Y, Matise TC, Monroe KR, Moreland L, Park SL, Reiner A, Wallace R, Wilkens LR, Crawford DC, Ritchie MD. Pendergrass SA, et al. Among authors: dudek s. PLoS Genet. 2013;9(1):e1003087. doi: 10.1371/journal.pgen.1003087. Epub 2013 Jan 31. PLoS Genet. 2013. PMID: 23382687 Free PMC article.
Next-generation analysis of cataracts: determining knowledge driven gene-gene interactions using Biofilter, and gene-environment interactions using the PhenX Toolkit.
Pendergrass SA, Verma SS, Holzinger ER, Moore CB, Wallace J, Dudek SM, Huggins W, Kitchner T, Waudby C, Berg R, McCarty CA, Ritchie MD. Pendergrass SA, et al. Among authors: dudek sm. Pac Symp Biocomput. 2013:147-58. Pac Symp Biocomput. 2013. PMID: 23424120 Free PMC article. Corrected and republished.
ATHENA: the analysis tool for heritable and environmental network associations.
Holzinger ER, Dudek SM, Frase AT, Pendergrass SA, Ritchie MD. Holzinger ER, et al. Bioinformatics. 2014 Mar 1;30(5):698-705. doi: 10.1093/bioinformatics/btt572. Epub 2013 Oct 21. Bioinformatics. 2014. PMID: 24149050 Free PMC article.
ATHENA: Identifying interactions between different levels of genomic data associated with cancer clinical outcomes using grammatical evolution neural network.
Kim D, Li R, Dudek SM, Ritchie MD. Kim D, et al. BioData Min. 2013 Dec 20;6(1):23. doi: 10.1186/1756-0381-6-23. BioData Min. 2013. PMID: 24359638 Free PMC article.
Knowledge-driven genomic interactions: an application in ovarian cancer.
Kim D, Li R, Dudek SM, Frase AT, Pendergrass SA, Ritchie MD. Kim D, et al. BioData Min. 2014 Sep 9;7:20. doi: 10.1186/1756-0381-7-20. eCollection 2014. BioData Min. 2014. PMID: 25214892 Free PMC article.
Identification of genetic interaction networks via an evolutionary algorithm evolved Bayesian network.
Li R, Dudek SM, Kim D, Hall MA, Bradford Y, Peissig PL, Brilliant MH, Linneman JG, McCarty CA, Bao L, Ritchie MD. Li R, et al. BioData Min. 2016 May 10;9:18. doi: 10.1186/s13040-016-0094-4. eCollection 2016. BioData Min. 2016. PMID: 27168765 Free PMC article.
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