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MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.
Tamura K, Dudley J, Nei M, Kumar S. Tamura K, et al. Mol Biol Evol. 2007 Aug;24(8):1596-9. doi: 10.1093/molbev/msm092. Epub 2007 May 7. Mol Biol Evol. 2007. PMID: 17488738
Bioinformatics software for biologists in the genomics era.
Kumar S, Dudley J. Kumar S, et al. Bioinformatics. 2007 Jul 15;23(14):1713-7. doi: 10.1093/bioinformatics/btm239. Epub 2007 May 7. Bioinformatics. 2007. PMID: 17485425
e-GRASP: an integrated evolutionary and GRASP resource for exploring disease associations.
Karim S, NourEldin HF, Abusamra H, Salem N, Alhathli E, Dudley J, Sanderford M, Scheinfeldt LB, Chaudhary AG, Al-Qahtani MH, Kumar S. Karim S, et al. BMC Genomics. 2016 Oct 17;17(Suppl 9):770. doi: 10.1186/s12864-016-3088-1. BMC Genomics. 2016. PMID: 27766955 Free PMC article.
Adaptive Landscape of Protein Variation in Human Exomes.
Patel R, Scheinfeldt LB, Sanderford MD, Lanham TR, Tamura K, Platt A, Glicksberg BS, Xu K, Dudley JT, Kumar S. Patel R, et al. Mol Biol Evol. 2018 Aug 1;35(8):2015-2025. doi: 10.1093/molbev/msy107. Mol Biol Evol. 2018. PMID: 29846678 Free PMC article.
TimeTree: a public knowledge-base of divergence times among organisms.
Hedges SB, Dudley J, Kumar S. Hedges SB, et al. Bioinformatics. 2006 Dec 1;22(23):2971-2. doi: 10.1093/bioinformatics/btl505. Epub 2006 Oct 4. Bioinformatics. 2006. PMID: 17021158
An integrative method for scoring candidate genes from association studies: application to warfarin dosing.
Tatonetti NP, Dudley JT, Sagreiya H, Butte AJ, Altman RB. Tatonetti NP, et al. BMC Bioinformatics. 2010 Oct 28;11 Suppl 9(Suppl 9):S9. doi: 10.1186/1471-2105-11-S9-S9. BMC Bioinformatics. 2010. PMID: 21044367 Free PMC article.
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