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Diverse circovirus-like genome architectures revealed by environmental metagenomics.
Rosario K, Duffy S, Breitbart M. Rosario K, et al. J Gen Virol. 2009 Oct;90(Pt 10):2418-2424. doi: 10.1099/vir.0.012955-0. Epub 2009 Jul 1. J Gen Virol. 2009. PMID: 19570956
Variability in P1 gene redefines phylogenetic relationships among cassava brown streak viruses.
Mbewe W, Tairo F, Sseruwagi P, Ndunguru J, Duffy S, Mukasa S, Benesi I, Sheat S, Koerbler M, Winter S. Mbewe W, et al. Virol J. 2017 Jun 20;14(1):118. doi: 10.1186/s12985-017-0790-9. Virol J. 2017. PMID: 28637472 Free PMC article.
Contrasting genetic structure between two begomoviruses infecting the same leguminous hosts.
Sobrinho RR, Xavier CAD, Pereira HMB, Lima GSA, Assunção IP, Mizubuti ESG, Duffy S, Zerbini FM. Sobrinho RR, et al. J Gen Virol. 2014 Nov;95(Pt 11):2540-2552. doi: 10.1099/vir.0.067009-0. Epub 2014 Jul 15. J Gen Virol. 2014. PMID: 25028472
Synonymous site variation due to recombination explains higher genetic variability in begomovirus populations infecting non-cultivated hosts.
Lima ATM, Sobrinho RR, González-Aguilera J, Rocha CS, Silva SJC, Xavier CAD, Silva FN, Duffy S, Zerbini FM. Lima ATM, et al. J Gen Virol. 2013 Feb;94(Pt 2):418-431. doi: 10.1099/vir.0.047241-0. Epub 2012 Nov 7. J Gen Virol. 2013. PMID: 23136367
Dating the origins of the maize-adapted strain of maize streak virus, MSV-A.
Harkins GW, Martin DP, Duffy S, Monjane AL, Shepherd DN, Windram OP, Owor BE, Donaldson L, van Antwerpen T, Sayed RA, Flett B, Ramusi M, Rybicki EP, Peterschmitt M, Varsani A. Harkins GW, et al. J Gen Virol. 2009 Dec;90(Pt 12):3066-3074. doi: 10.1099/vir.0.015537-0. Epub 2009 Aug 19. J Gen Virol. 2009. PMID: 19692547 Free PMC article.
Our results indicate that this recombination event occurred in the mid-1800 s, approximately 20 years before the first credible reports of MSD in South Africa and centuries after the introduction of maize to the continent in the early 1500 s. ...
Our results indicate that this recombination event occurred in the mid-1800 s, approximately 20 years before the first credible repor …
Experimental evidence indicating that mastreviruses probably did not co-diverge with their hosts.
Harkins GW, Delport W, Duffy S, Wood N, Monjane AL, Owor BE, Donaldson L, Saumtally S, Triton G, Briddon RW, Shepherd DN, Rybicki EP, Martin DP, Varsani A. Harkins GW, et al. Virol J. 2009 Jul 16;6:104. doi: 10.1186/1743-422X-6-104. Virol J. 2009. PMID: 19607673 Free PMC article.
Vector-Enabled Metagenomic (VEM) Surveys Using Whiteflies (Aleyrodidae) Reveal Novel Begomovirus Species in the New and Old Worlds.
Rosario K, Seah YM, Marr C, Varsani A, Kraberger S, Stainton D, Moriones E, Polston JE, Duffy S, Breitbart M. Rosario K, et al. Viruses. 2015 Oct 26;7(10):5553-70. doi: 10.3390/v7102895. Viruses. 2015. PMID: 26516898 Free PMC article.
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