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Single-stranded genomic architecture constrains optimal codon usage.
Cardinale DJ, Duffy S. Cardinale DJ, et al. Bacteriophage. 2011 Jul;1(4):219-224. doi: 10.4161/bact.1.4.18496. Epub 2011 Jul 1. Bacteriophage. 2011. PMID: 22334868 Free PMC article.
Overlooking the smallest matter: viruses impact biological invasions.
Faillace CA, Lorusso NS, Duffy S. Faillace CA, et al. Ecol Lett. 2017 Apr;20(4):524-538. doi: 10.1111/ele.12742. Epub 2017 Feb 8. Ecol Lett. 2017. PMID: 28176452 Review.
Existing Host Range Mutations Constrain Further Emergence of RNA Viruses.
Zhao L, Seth-Pasricha M, Stemate D, Crespo-Bellido A, Gagnon J, Draghi J, Duffy S. Zhao L, et al. J Virol. 2019 Feb 5;93(4):e01385-18. doi: 10.1128/JVI.01385-18. Print 2019 Feb 15. J Virol. 2019. PMID: 30463962 Free PMC article.
Contrasting genetic structure between two begomoviruses infecting the same leguminous hosts.
Sobrinho RR, Xavier CAD, Pereira HMB, Lima GSA, Assunção IP, Mizubuti ESG, Duffy S, Zerbini FM. Sobrinho RR, et al. J Gen Virol. 2014 Nov;95(Pt 11):2540-2552. doi: 10.1099/vir.0.067009-0. Epub 2014 Jul 15. J Gen Virol. 2014. PMID: 25028472
Bioinformatic analysis reveals genome size reduction and the emergence of tyrosine phosphorylation site in the movement protein of New World bipartite begomoviruses.
Ho ES, Kuchie J, Duffy S. Ho ES, et al. PLoS One. 2014 Nov 10;9(11):e111957. doi: 10.1371/journal.pone.0111957. eCollection 2014. PLoS One. 2014. PMID: 25383632 Free PMC article.
Our bioinformatic analysis suggests ∼ 120 nucleotides were deleted from PCP's proximal promoter region that may have contributed to its loss in the New World viruses. ...
Our bioinformatic analysis suggests ∼ 120 nucleotides were deleted from PCP's proximal promoter region that may have contributed to i …
The diversification of begomovirus populations is predominantly driven by mutational dynamics.
Lima ATM, Silva JCF, Silva FN, Castillo-Urquiza GP, Silva FF, Seah YM, Mizubuti ESG, Duffy S, Zerbini FM. Lima ATM, et al. Virus Evol. 2017 Mar 2;3(1):vex005. doi: 10.1093/ve/vex005. eCollection 2017 Jan. Virus Evol. 2017. PMID: 28458915 Free PMC article.
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