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1,151 results
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Xenolog classification.
Darby CA, Stolzer M, Ropp PJ, Barker D, Durand D. Darby CA, et al. Among authors: durand d. Bioinformatics. 2017 Mar 1;33(5):640-649. doi: 10.1093/bioinformatics/btw686. Bioinformatics. 2017. PMID: 27998934 Free PMC article.
Reconciliation with non-binary species trees.
Vernot B, Stolzer M, Goldman A, Durand D. Vernot B, et al. Among authors: durand d. J Comput Biol. 2008 Oct;15(8):981-1006. doi: 10.1089/cmb.2008.0092. J Comput Biol. 2008. PMID: 18808330 Free PMC article.
Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees.
Stolzer M, Lai H, Xu M, Sathaye D, Vernot B, Durand D. Stolzer M, et al. Among authors: durand d. Bioinformatics. 2012 Sep 15;28(18):i409-i415. doi: 10.1093/bioinformatics/bts386. Bioinformatics. 2012. PMID: 22962460 Free PMC article.
MOTIVATION: Gene duplication (D), transfer (T), loss (L) and incomplete lineage sorting (I) are crucial to the evolution of gene families and the emergence of novel functions. ...AVAILABILITY: Our algorithms have been implemented in Notung, a freely available phylogenetic …
MOTIVATION: Gene duplication (D), transfer (T), loss (L) and incomplete lineage sorting (I) are crucial to the evolution of gene fami …
Family classification without domain chaining.
Joseph JM, Durand D. Joseph JM, et al. Among authors: durand d. Bioinformatics. 2009 Jun 15;25(12):i45-53. doi: 10.1093/bioinformatics/btp207. Bioinformatics. 2009. PMID: 19478015 Free PMC article.
Gene cluster statistics with gene families.
Raghupathy N, Durand D. Raghupathy N, et al. Among authors: durand d. Mol Biol Evol. 2009 May;26(5):957-68. doi: 10.1093/molbev/msp002. Epub 2009 Jan 15. Mol Biol Evol. 2009. PMID: 19150803 Free PMC article.
Diagnosing duplications--can it be done?
Durand D, Hoberman R. Durand D, et al. Trends Genet. 2006 Mar;22(3):156-64. doi: 10.1016/j.tig.2006.01.002. Epub 2006 Jan 26. Trends Genet. 2006. PMID: 16442663 Review.
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