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Fast and accurate short read alignment with Burrows-Wheeler transform.
Li H, Durbin R. Li H, et al. Bioinformatics. 2009 Jul 15;25(14):1754-60. doi: 10.1093/bioinformatics/btp324. Epub 2009 May 18. Bioinformatics. 2009. PMID: 19451168 Free PMC article.
An expert system for processing sequence homology data.
Sonnhammer EL, Durbin R. Sonnhammer EL, et al. Proc Int Conf Intell Syst Mol Biol. 1994;2:363-8. Proc Int Conf Intell Syst Mol Biol. 1994. PMID: 7584413
A workbench for large-scale sequence homology analysis.
Sonnhammer EL, Durbin R. Sonnhammer EL, et al. Comput Appl Biosci. 1994 Jun;10(3):301-7. doi: 10.1093/bioinformatics/10.3.301. Comput Appl Biosci. 1994. PMID: 7922687
Pfam: a comprehensive database of protein domain families based on seed alignments.
Sonnhammer EL, Eddy SR, Durbin R. Sonnhammer EL, et al. Proteins. 1997 Jul;28(3):405-20. doi: 10.1002/(sici)1097-0134(199707)28:3<405::aid-prot10>3.0.co;2-l. Proteins. 1997. PMID: 9223186
Base qualities help sequencing software.
Durbin R, Dear S. Durbin R, et al. Genome Res. 1998 Mar;8(3):161-2. doi: 10.1101/gr.8.3.161. Genome Res. 1998. PMID: 9521917 Review. No abstract available.
Sequence assembly with CAFTOOLS.
Dear S, Durbin R, Hillier L, Marth G, Thierry-Mieg J, Mott R. Dear S, et al. Genome Res. 1998 Mar;8(3):260-7. doi: 10.1101/gr.8.3.260. Genome Res. 1998. PMID: 9521929 Free PMC article.
Dynamic programming alignment accuracy.
Holmes I, Durbin R. Holmes I, et al. J Comput Biol. 1998 Fall;5(3):493-504. doi: 10.1089/cmb.1998.5.493. J Comput Biol. 1998. PMID: 9773345
Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins.
Bateman A, Birney E, Durbin R, Eddy SR, Finn RD, Sonnhammer EL. Bateman A, et al. Nucleic Acids Res. 1999 Jan 1;27(1):260-2. doi: 10.1093/nar/27.1.260. Nucleic Acids Res. 1999. PMID: 9847196 Free PMC article.
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