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Pfam: a comprehensive database of protein domain families based on seed alignments.
Sonnhammer EL, Eddy SR, Durbin R. Sonnhammer EL, et al. Among authors: durbin r. Proteins. 1997 Jul;28(3):405-20. doi: 10.1002/(sici)1097-0134(199707)28:3<405::aid-prot10>3.0.co;2-l. Proteins. 1997. PMID: 9223186
Method for calculation of probability of matching a bounded regular expression in a random data string.
Sewell RF, Durbin R. Sewell RF, et al. Among authors: durbin r. J Comput Biol. 1995 Spring;2(1):25-31. doi: 10.1089/cmb.1995.2.25. J Comput Biol. 1995. PMID: 7497117
An expert system for processing sequence homology data.
Sonnhammer EL, Durbin R. Sonnhammer EL, et al. Among authors: durbin r. Proc Int Conf Intell Syst Mol Biol. 1994;2:363-8. Proc Int Conf Intell Syst Mol Biol. 1994. PMID: 7584413
A workbench for large-scale sequence homology analysis.
Sonnhammer EL, Durbin R. Sonnhammer EL, et al. Among authors: durbin r. Comput Appl Biosci. 1994 Jun;10(3):301-7. doi: 10.1093/bioinformatics/10.3.301. Comput Appl Biosci. 1994. PMID: 7922687
RNA sequence analysis using covariance models.
Eddy SR, Durbin R. Eddy SR, et al. Among authors: durbin r. Nucleic Acids Res. 1994 Jun 11;22(11):2079-88. doi: 10.1093/nar/22.11.2079. Nucleic Acids Res. 1994. PMID: 8029015 Free PMC article.
A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis.
Sonnhammer EL, Durbin R. Sonnhammer EL, et al. Among authors: durbin r. Gene. 1995 Dec 29;167(1-2):GC1-10. doi: 10.1016/0378-1119(95)00714-8. Gene. 1995. PMID: 8566757
Dynamite: a flexible code generating language for dynamic programming methods used in sequence comparison.
Birney E, Durbin R. Birney E, et al. Among authors: durbin r. Proc Int Conf Intell Syst Mol Biol. 1997;5:56-64. Proc Int Conf Intell Syst Mol Biol. 1997. PMID: 9322016
Pfam: multiple sequence alignments and HMM-profiles of protein domains.
Sonnhammer EL, Eddy SR, Birney E, Bateman A, Durbin R. Sonnhammer EL, et al. Among authors: durbin r. Nucleic Acids Res. 1998 Jan 1;26(1):320-2. doi: 10.1093/nar/26.1.320. Nucleic Acids Res. 1998. PMID: 9399864 Free PMC article.
Analysis of protein domain families in Caenorhabditis elegans.
Sonnhammer EL, Durbin R. Sonnhammer EL, et al. Among authors: durbin r. Genomics. 1997 Dec 1;46(2):200-16. doi: 10.1006/geno.1997.4989. Genomics. 1997. PMID: 9417907
Sequence assembly with CAFTOOLS.
Dear S, Durbin R, Hillier L, Marth G, Thierry-Mieg J, Mott R. Dear S, et al. Among authors: durbin r. Genome Res. 1998 Mar;8(3):260-7. doi: 10.1101/gr.8.3.260. Genome Res. 1998. PMID: 9521929 Free PMC article.
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