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tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes.
Duret L. Duret L. Trends Genet. 2000 Jul;16(7):287-9. doi: 10.1016/s0168-9525(00)02041-2. Trends Genet. 2000. PMID: 10858656 Review. No abstract available.
Strong conservation of non-coding sequences during vertebrates evolution: potential involvement in post-transcriptional regulation of gene expression.
Duret L, Dorkeld F, Gautier C. Duret L, et al. Nucleic Acids Res. 1993 May 25;21(10):2315-22. doi: 10.1093/nar/21.10.2315. Nucleic Acids Res. 1993. PMID: 8506129 Free PMC article.
New insulin-like proteins with atypical disulfide bond pattern characterized in Caenorhabditis elegans by comparative sequence analysis and homology modeling.
Duret L, Guex N, Peitsch MC, Bairoch A. Duret L, et al. Genome Res. 1998 Apr;8(4):348-53. doi: 10.1101/gr.8.4.348. Genome Res. 1998. PMID: 9548970
Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.
Duret L, Mouchiroud D. Duret L, et al. Proc Natl Acad Sci U S A. 1999 Apr 13;96(8):4482-7. doi: 10.1073/pnas.96.8.4482. Proc Natl Acad Sci U S A. 1999. PMID: 10200288 Free PMC article.
Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate.
Duret L, Mouchiroud D. Duret L, et al. Mol Biol Evol. 2000 Jan;17(1):68-74. doi: 10.1093/oxfordjournals.molbev.a026239. Mol Biol Evol. 2000. PMID: 10666707
HOBACGEN: database system for comparative genomics in bacteria.
Perrière G, Duret L, Gouy M. Perrière G, et al. Among authors: duret l. Genome Res. 2000 Mar;10(3):379-85. doi: 10.1101/gr.10.3.379. Genome Res. 2000. PMID: 10720578 Free PMC article.
Nature and structure of human genes that generate retropseudogenes.
Gonçalves I, Duret L, Mouchiroud D. Gonçalves I, et al. Among authors: duret l. Genome Res. 2000 May;10(5):672-8. doi: 10.1101/gr.10.5.672. Genome Res. 2000. PMID: 10810090 Free PMC article.
The covariation between TpA deficiency, CpG deficiency, and G+C content of human isochores is due to a mathematical artifact.
Duret L, Galtier N. Duret L, et al. Mol Biol Evol. 2000 Nov;17(11):1620-5. doi: 10.1093/oxfordjournals.molbev.a026261. Mol Biol Evol. 2000. PMID: 11070050
Transposons but not retrotransposons are located preferentially in regions of high recombination rate in Caenorhabditis elegans.
Duret L, Marais G, Biémont C. Duret L, et al. Genetics. 2000 Dec;156(4):1661-9. Genetics. 2000. PMID: 11102365 Free PMC article.
Why do genes have introns? Recombination might add a new piece to the puzzle.
Duret L. Duret L. Trends Genet. 2001 Apr;17(4):172-5. doi: 10.1016/s0168-9525(01)02236-3. Trends Genet. 2001. PMID: 11275306 No abstract available.
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