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miRWalk--database: prediction of possible miRNA binding sites by "walking" the genes of three genomes.
Dweep H, Sticht C, Pandey P, Gretz N. Dweep H, et al. J Biomed Inform. 2011 Oct;44(5):839-47. doi: 10.1016/j.jbi.2011.05.002. Epub 2011 May 14. J Biomed Inform. 2011. PMID: 21605702
A Comprehensive Review on the Genetic Regulation of Cisplatin-induced Nephrotoxicity.
Herrera-Pérez Z, Gretz N, Dweep H. Herrera-Pérez Z, et al. Among authors: dweep h. Curr Genomics. 2016 Jun;17(3):279-93. doi: 10.2174/1389202917666160202220555. Curr Genomics. 2016. PMID: 27252593 Free PMC article.
Alteration of mRNA and microRNA expression profiles in rat muscular type vasculature in early postnatal development.
Gaynullina D, Dweep H, Gloe T, Tarasova OS, Sticht C, Gretz N, Schubert R. Gaynullina D, et al. Among authors: dweep h. Sci Rep. 2015 Jun 15;5:11106. doi: 10.1038/srep11106. Sci Rep. 2015. PMID: 26073182 Free PMC article.
In-Silico Algorithms for the Screening of Possible microRNA Binding Sites and Their Interactions.
Dweep H, Sticht C, Gretz N. Dweep H, et al. Curr Genomics. 2013 Apr;14(2):127-36. doi: 10.2174/1389202911314020005. Curr Genomics. 2013. PMID: 24082822 Free PMC article.
CNVs-microRNAs interactions demonstrate unique characteristics in the human genome. An interspecies in silico analysis.
Dweep H, Georgiou GD, Gretz N, Deltas C, Voskarides K, Felekkis K. Dweep H, et al. PLoS One. 2013 Dec 2;8(12):e81204. doi: 10.1371/journal.pone.0081204. eCollection 2013. PLoS One. 2013. PMID: 24312536 Free PMC article.
Obtaining miRNA-Target Interaction Information from miRWalk2.0.
Parveen A, Gretz N, Dweep H. Parveen A, et al. Among authors: dweep h. Curr Protoc Bioinformatics. 2016 Sep 7;55:12.15.1-12.15.27. doi: 10.1002/cpbi.14. Curr Protoc Bioinformatics. 2016. PMID: 27603021
miRWalk2.0: a comprehensive atlas of microRNA-target interactions.
Dweep H, Gretz N. Dweep H, et al. Nat Methods. 2015 Aug;12(8):697. doi: 10.1038/nmeth.3485. Nat Methods. 2015. PMID: 26226356 No abstract available.
A schematic workflow for collecting information about the interaction between copy number variants and microRNAs using existing resources.
Dweep H, Gretz N, Felekkis K. Dweep H, et al. Methods Mol Biol. 2014;1182:307-20. doi: 10.1007/978-1-4939-1062-5_26. Methods Mol Biol. 2014. PMID: 25055921
miRWalk database for miRNA-target interactions.
Dweep H, Gretz N, Sticht C. Dweep H, et al. Methods Mol Biol. 2014;1182:289-305. doi: 10.1007/978-1-4939-1062-5_25. Methods Mol Biol. 2014. PMID: 25055920
Increased number of microRNA target sites in genes encoded in CNV regions. Evidence for an evolutionary genomic interaction.
Felekkis K, Voskarides K, Dweep H, Sticht C, Gretz N, Deltas C. Felekkis K, et al. Among authors: dweep h. Mol Biol Evol. 2011 Sep;28(9):2421-4. doi: 10.1093/molbev/msr078. Epub 2011 Mar 25. Mol Biol Evol. 2011. PMID: 21441354
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