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Methods for cell and particle tracking.
Meijering E, Dzyubachyk O, Smal I. Meijering E, et al. Methods Enzymol. 2012;504:183-200. doi: 10.1016/B978-0-12-391857-4.00009-4. Methods Enzymol. 2012. PMID: 22264535 Review.
Tracking in cell and developmental biology.
Meijering E, Dzyubachyk O, Smal I, van Cappellen WA. Meijering E, et al. Semin Cell Dev Biol. 2009 Oct;20(8):894-902. doi: 10.1016/j.semcdb.2009.07.004. Epub 2009 Aug 4. Semin Cell Dev Biol. 2009. PMID: 19660567 Review.
Advanced level-set-based cell tracking in time-lapse fluorescence microscopy.
Dzyubachyk O, van Cappellen WA, Essers J, Niessen WJ, Meijering E. Dzyubachyk O, et al. IEEE Trans Med Imaging. 2010 Mar;29(3):852-67. doi: 10.1109/TMI.2009.2038693. IEEE Trans Med Imaging. 2010. PMID: 20199920
Automated analysis of time-lapse fluorescence microscopy images: from live cell images to intracellular foci.
Dzyubachyk O, Essers J, van Cappellen WA, Baldeyron C, Inagaki A, Niessen WJ, Meijering E. Dzyubachyk O, et al. Bioinformatics. 2010 Oct 1;26(19):2424-30. doi: 10.1093/bioinformatics/btq434. Epub 2010 Aug 11. Bioinformatics. 2010. PMID: 20702399
Comparative exploration of whole-body MR through locally rigid transforms.
Dzyubachyk O, Blaas J, Botha CP, Staring M, Reijnierse M, Bloem JL, van der Geest RJ, Lelieveldt BP. Dzyubachyk O, et al. Int J Comput Assist Radiol Surg. 2013 Jul;8(4):635-47. doi: 10.1007/s11548-013-0820-z. Epub 2013 Jun 1. Int J Comput Assist Radiol Surg. 2013. PMID: 23729332 Free PMC article.
Joint intensity inhomogeneity correction for whole-body MR data.
Dzyubachyk O, van der Geest RJ, Staring M, Börnert P, Reijnierse M, Bloeml JL, Lelieveldt BP. Dzyubachyk O, et al. Med Image Comput Comput Assist Interv. 2013;16(Pt 1):106-13. doi: 10.1007/978-3-642-40811-3_14. Med Image Comput Comput Assist Interv. 2013. PMID: 24505655
Improved myocardial scar characterization by super-resolution reconstruction in late gadolinium enhanced MRI.
Dzyubachyk O, Tao Q, Poot DH, Lamb H, Zeppenfeld K, Lelieveldt BP, van der Geest RJ. Dzyubachyk O, et al. Med Image Comput Comput Assist Interv. 2013;16(Pt 3):147-54. doi: 10.1007/978-3-642-40760-4_19. Med Image Comput Comput Assist Interv. 2013. PMID: 24505755
A benchmark for comparison of cell tracking algorithms.
Maška M, Ulman V, Svoboda D, Matula P, Matula P, Ederra C, Urbiola A, España T, Venkatesan S, Balak DM, Karas P, Bolcková T, Streitová M, Carthel C, Coraluppi S, Harder N, Rohr K, Magnusson KE, Jaldén J, Blau HM, Dzyubachyk O, Křížek P, Hagen GM, Pastor-Escuredo D, Jimenez-Carretero D, Ledesma-Carbayo MJ, Muñoz-Barrutia A, Meijering E, Kozubek M, Ortiz-de-Solorzano C. Maška M, et al. Bioinformatics. 2014 Jun 1;30(11):1609-17. doi: 10.1093/bioinformatics/btu080. Epub 2014 Feb 12. Bioinformatics. 2014. PMID: 24526711 Free PMC article.
Super-resolution reconstruction of late gadolinium-enhanced MRI for improved myocardial scar assessment.
Dzyubachyk O, Tao Q, Poot DH, Lamb HJ, Zeppenfeld K, Lelieveldt BP, van der Geest RJ. Dzyubachyk O, et al. J Magn Reson Imaging. 2015 Jul;42(1):160-7. doi: 10.1002/jmri.24759. Epub 2014 Sep 19. J Magn Reson Imaging. 2015. PMID: 25236764
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