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Correction of mass calibration gaps in liquid chromatography-mass spectrometry metabolomics data.
Benton HP, Want EJ, Ebbels TM. Benton HP, et al. Among authors: ebbels tm. Bioinformatics. 2010 Oct 1;26(19):2488-9. doi: 10.1093/bioinformatics/btq441. Epub 2010 Jul 29. Bioinformatics. 2010. PMID: 20671148
Comparative metabonomics of differential hydrazine toxicity in the rat and mouse.
Bollard ME, Keun HC, Beckonert O, Ebbels TM, Antti H, Nicholls AW, Shockcor JP, Cantor GH, Stevens G, Lindon JC, Holmes E, Nicholson JK. Bollard ME, et al. Among authors: ebbels tm. Toxicol Appl Pharmacol. 2005 Apr 15;204(2):135-51. doi: 10.1016/j.taap.2004.06.031. Toxicol Appl Pharmacol. 2005. PMID: 15808519
The Consortium for Metabonomic Toxicology (COMET): aims, activities and achievements.
Lindon JC, Keun HC, Ebbels TM, Pearce JM, Holmes E, Nicholson JK. Lindon JC, et al. Among authors: ebbels tm. Pharmacogenomics. 2005 Oct;6(7):691-9. doi: 10.2217/14622416.6.7.691. Pharmacogenomics. 2005. PMID: 16207146 Review.
springScape: visualisation of microarray and contextual bioinformatic data using spring embedding and an 'information landscape'.
Ebbels TM, Buxton BF, Jones DT. Ebbels TM, et al. Bioinformatics. 2006 Jul 15;22(14):e99-107. doi: 10.1093/bioinformatics/btl205. Bioinformatics. 2006. PMID: 16873528
Metabolic profiling, metabolomic and metabonomic procedures for NMR spectroscopy of urine, plasma, serum and tissue extracts.
Beckonert O, Keun HC, Ebbels TM, Bundy J, Holmes E, Lindon JC, Nicholson JK. Beckonert O, et al. Among authors: ebbels tm. Nat Protoc. 2007;2(11):2692-703. doi: 10.1038/nprot.2007.376. Nat Protoc. 2007. PMID: 18007604
Piecewise multivariate modelling of sequential metabolic profiling data.
Rantalainen M, Cloarec O, Ebbels TM, Lundstedt T, Nicholson JK, Holmes E, Trygg J. Rantalainen M, et al. Among authors: ebbels tm. BMC Bioinformatics. 2008 Feb 19;9:105. doi: 10.1186/1471-2105-9-105. BMC Bioinformatics. 2008. PMID: 18284665 Free PMC article.
Robust algorithms for automated chemical shift calibration of 1D 1H NMR spectra of blood serum.
Pearce JT, Athersuch TJ, Ebbels TM, Lindon JC, Nicholson JK, Keun HC. Pearce JT, et al. Among authors: ebbels tm. Anal Chem. 2008 Sep 15;80(18):7158-62. doi: 10.1021/ac8011494. Epub 2008 Aug 15. Anal Chem. 2008. PMID: 18702533
Genetic algorithms for simultaneous variable and sample selection in metabonomics.
Cavill R, Keun HC, Holmes E, Lindon JC, Nicholson JK, Ebbels TM. Cavill R, et al. Among authors: ebbels tm. Bioinformatics. 2009 Jan 1;25(1):112-8. doi: 10.1093/bioinformatics/btn586. Epub 2008 Nov 14. Bioinformatics. 2009. PMID: 19010803
Recursive segment-wise peak alignment of biological (1)h NMR spectra for improved metabolic biomarker recovery.
Veselkov KA, Lindon JC, Ebbels TM, Crockford D, Volynkin VV, Holmes E, Davies DB, Nicholson JK. Veselkov KA, et al. Among authors: ebbels tm. Anal Chem. 2009 Jan 1;81(1):56-66. doi: 10.1021/ac8011544. Anal Chem. 2009. PMID: 19049366
Analytic properties of statistical total correlation spectroscopy based information recovery in 1H NMR metabolic data sets.
Alves AC, Rantalainen M, Holmes E, Nicholson JK, Ebbels TM. Alves AC, et al. Among authors: ebbels tm. Anal Chem. 2009 Mar 15;81(6):2075-84. doi: 10.1021/ac801982h. Anal Chem. 2009. PMID: 19220030
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