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A map of general and specialized chromatin readers in mouse tissues generated by label-free interaction proteomics.
Eberl HC, Spruijt CG, Kelstrup CD, Vermeulen M, Mann M. Eberl HC, et al. Mol Cell. 2013 Jan 24;49(2):368-78. doi: 10.1016/j.molcel.2012.10.026. Epub 2012 Nov 29. Mol Cell. 2013. PMID: 23201125
Monitoring Dynamic Changes of the Cell Surface Glycoproteome by Quantitative Proteomics.
Kalxdorf M, Eberl HC, Bantscheff M. Kalxdorf M, et al. Among authors: eberl hc. Methods Mol Biol. 2017;1647:47-59. doi: 10.1007/978-1-4939-7201-2_3. Methods Mol Biol. 2017. PMID: 28808994
Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives.
Spruijt CG, Gnerlich F, Smits AH, Pfaffeneder T, Jansen PW, Bauer C, Münzel M, Wagner M, Müller M, Khan F, Eberl HC, Mensinga A, Brinkman AB, Lephikov K, Müller U, Walter J, Boelens R, van Ingen H, Leonhardt H, Carell T, Vermeulen M. Spruijt CG, et al. Among authors: eberl hc. Cell. 2013 Feb 28;152(5):1146-59. doi: 10.1016/j.cell.2013.02.004. Epub 2013 Feb 21. Cell. 2013. PMID: 23434322
H3.Y discriminates between HIRA and DAXX chaperone complexes and reveals unexpected insights into human DAXX-H3.3-H4 binding and deposition requirements.
Zink LM, Delbarre E, Eberl HC, Keilhauer EC, Bönisch C, Pünzeler S, Bartkuhn M, Collas P, Mann M, Hake SB. Zink LM, et al. Among authors: eberl hc. Nucleic Acids Res. 2017 Jun 2;45(10):5691-5706. doi: 10.1093/nar/gkx131. Nucleic Acids Res. 2017. PMID: 28334823 Free PMC article.
A Double-Barrel Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS) System to Quantify 96 Interactomes per Day.
Hosp F, Scheltema RA, Eberl HC, Kulak NA, Keilhauer EC, Mayr K, Mann M. Hosp F, et al. Among authors: eberl hc. Mol Cell Proteomics. 2015 Jul;14(7):2030-41. doi: 10.1074/mcp.O115.049460. Epub 2015 Apr 17. Mol Cell Proteomics. 2015. PMID: 25887394 Free PMC article.
Dicer-dependent and -independent Argonaute2 protein interaction networks in mammalian cells.
Frohn A, Eberl HC, Stöhr J, Glasmacher E, Rüdel S, Heissmeyer V, Mann M, Meister G. Frohn A, et al. Among authors: eberl hc. Mol Cell Proteomics. 2012 Nov;11(11):1442-56. doi: 10.1074/mcp.M112.017756. Epub 2012 Aug 23. Mol Cell Proteomics. 2012. PMID: 22918229 Free PMC article.
Quantitative proteomics for epigenetics.
Eberl HC, Mann M, Vermeulen M. Eberl HC, et al. Chembiochem. 2011 Jan 24;12(2):224-34. doi: 10.1002/cbic.201000429. Epub 2010 Nov 17. Chembiochem. 2011. PMID: 21243711 Review.
Investigation of protein-tyrosine phosphatase 1B function by quantitative proteomics.
Mertins P, Eberl HC, Renkawitz J, Olsen JV, Tremblay ML, Mann M, Ullrich A, Daub H. Mertins P, et al. Among authors: eberl hc. Mol Cell Proteomics. 2008 Sep;7(9):1763-77. doi: 10.1074/mcp.M800196-MCP200. Epub 2008 May 31. Mol Cell Proteomics. 2008. PMID: 18515860 Free PMC article.
Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers.
Vermeulen M, Eberl HC, Matarese F, Marks H, Denissov S, Butter F, Lee KK, Olsen JV, Hyman AA, Stunnenberg HG, Mann M. Vermeulen M, et al. Among authors: eberl hc. Cell. 2010 Sep 17;142(6):967-80. doi: 10.1016/j.cell.2010.08.020. Cell. 2010. PMID: 20850016
H2A.Z.2.2 is an alternatively spliced histone H2A.Z variant that causes severe nucleosome destabilization.
Bönisch C, Schneider K, Pünzeler S, Wiedemann SM, Bielmeier C, Bocola M, Eberl HC, Kuegel W, Neumann J, Kremmer E, Leonhardt H, Mann M, Michaelis J, Schermelleh L, Hake SB. Bönisch C, et al. Among authors: eberl hc. Nucleic Acids Res. 2012 Jul;40(13):5951-64. doi: 10.1093/nar/gks267. Epub 2012 Mar 29. Nucleic Acids Res. 2012. PMID: 22467210 Free PMC article.
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