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Transcription activation by catabolite activator protein (CAP).
Busby S, Ebright RH. Busby S, et al. Among authors: ebright rh. J Mol Biol. 1999 Oct 22;293(2):199-213. doi: 10.1006/jmbi.1999.3161. J Mol Biol. 1999. PMID: 10550204 Review.
Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis.
Kapanidis AN, Margeat E, Laurence TA, Doose S, Ho SO, Mukhopadhyay J, Kortkhonjia E, Mekler V, Ebright RH, Weiss S. Kapanidis AN, et al. Among authors: ebright rh. Mol Cell. 2005 Nov 11;20(3):347-56. doi: 10.1016/j.molcel.2005.10.012. Mol Cell. 2005. PMID: 16285917
The initiation factor TFE and the elongation factor Spt4/5 compete for the RNAP clamp during transcription initiation and elongation.
Grohmann D, Nagy J, Chakraborty A, Klose D, Fielden D, Ebright RH, Michaelis J, Werner F. Grohmann D, et al. Among authors: ebright rh. Mol Cell. 2011 Jul 22;43(2):263-74. doi: 10.1016/j.molcel.2011.05.030. Mol Cell. 2011. PMID: 21777815 Free PMC article.
Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes.
Margeat E, Kapanidis AN, Tinnefeld P, Wang Y, Mukhopadhyay J, Ebright RH, Weiss S. Margeat E, et al. Among authors: ebright rh. Biophys J. 2006 Feb 15;90(4):1419-31. doi: 10.1529/biophysj.105.069252. Epub 2005 Nov 18. Biophys J. 2006. PMID: 16299085 Free PMC article.
Requirement for two copies of RNA polymerase alpha subunit C-terminal domain for synergistic transcription activation at complex bacterial promoters.
Lloyd GS, Niu W, Tebbutt J, Ebright RH, Busby SJ. Lloyd GS, et al. Among authors: ebright rh. Genes Dev. 2002 Oct 1;16(19):2557-65. doi: 10.1101/gad.237502. Genes Dev. 2002. PMID: 12368266 Free PMC article.
Functional interaction between RNA polymerase alpha subunit C-terminal domain and sigma70 in UP-element- and activator-dependent transcription.
Chen H, Tang H, Ebright RH. Chen H, et al. Among authors: ebright rh. Mol Cell. 2003 Jun;11(6):1621-33. doi: 10.1016/s1097-2765(03)00201-6. Mol Cell. 2003. PMID: 12820974
Massively Systematic Transcript End Readout, "MASTER": Transcription Start Site Selection, Transcriptional Slippage, and Transcript Yields.
Vvedenskaya IO, Zhang Y, Goldman SR, Valenti A, Visone V, Taylor DM, Ebright RH, Nickels BE. Vvedenskaya IO, et al. Among authors: ebright rh. Mol Cell. 2015 Dec 17;60(6):953-65. doi: 10.1016/j.molcel.2015.10.029. Epub 2015 Nov 25. Mol Cell. 2015. PMID: 26626484 Free PMC article.
Site-specific incorporation of probes into RNA polymerase by unnatural-amino-acid mutagenesis and Staudinger-Bertozzi ligation.
Chakraborty A, Mazumder A, Lin M, Hasemeyer A, Xu Q, Wang D, Ebright YW, Ebright RH. Chakraborty A, et al. Among authors: ebright yw, ebright rh. Methods Mol Biol. 2015;1276:101-31. doi: 10.1007/978-1-4939-2392-2_6. Methods Mol Biol. 2015. PMID: 25665560 Free PMC article.
The transcription bubble of the RNA polymerase-promoter open complex exhibits conformational heterogeneity and millisecond-scale dynamics: implications for transcription start-site selection.
Robb NC, Cordes T, Hwang LC, Gryte K, Duchi D, Craggs TD, Santoso Y, Weiss S, Ebright RH, Kapanidis AN. Robb NC, et al. Among authors: ebright rh. J Mol Biol. 2013 Mar 11;425(5):875-85. doi: 10.1016/j.jmb.2012.12.015. Epub 2012 Dec 28. J Mol Biol. 2013. PMID: 23274143 Free PMC article.
Structural basis of transcription initiation.
Zhang Y, Feng Y, Chatterjee S, Tuske S, Ho MX, Arnold E, Ebright RH. Zhang Y, et al. Among authors: ebright rh. Science. 2012 Nov 23;338(6110):1076-80. doi: 10.1126/science.1227786. Epub 2012 Oct 18. Science. 2012. PMID: 23086998 Free PMC article.
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