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Dissecting sources of quantitative gene expression pattern divergence between Drosophila species.
Mol Syst Biol. 2012;8:604. doi: 10.1038/msb.2012.35.
Mol Syst Biol. 2012.
PMID: 22893002
Free PMC article.
Quantitative Measurement and Thermodynamic Modeling of Fused Enhancers Support a Two-Tiered Mechanism for Interpreting Regulatory DNA.
Samee MAH, Lydiard-Martin T, Biette KM, Vincent BJ, Bragdon MD, Eckenrode KB, Wunderlich Z, Estrada J, Sinha S, DePace AH.
Samee MAH, et al. Among authors: eckenrode kb.
Cell Rep. 2017 Oct 3;21(1):236-245. doi: 10.1016/j.celrep.2017.09.033.
Cell Rep. 2017.
PMID: 28978476
Free PMC article.
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Quantitative Comparison of the Anterior-Posterior Patterning System in the Embryos of Five Drosophila Species.
Wunderlich Z, Fowlkes CC, Eckenrode KB, Bragdon MDJ, Abiri A, DePace AH.
Wunderlich Z, et al. Among authors: eckenrode kb.
G3 (Bethesda). 2019 Jul 9;9(7):2171-2182. doi: 10.1534/g3.118.200953.
G3 (Bethesda). 2019.
PMID: 31048401
Free PMC article.
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A conserved developmental patterning network produces quantitatively different output in multiple species of Drosophila.
Fowlkes CC, Eckenrode KB, Bragdon MD, Meyer M, Wunderlich Z, Simirenko L, Luengo Hendriks CL, Keränen SV, Henriquez C, Knowles DW, Biggin MD, Eisen MB, DePace AH.
Fowlkes CC, et al. Among authors: eckenrode kb.
PLoS Genet. 2011 Oct;7(10):e1002346. doi: 10.1371/journal.pgen.1002346. Epub 2011 Oct 27.
PLoS Genet. 2011.
PMID: 22046143
Free PMC article.
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Reporting guidelines for human microbiome research: the STORMS checklist.
Mirzayi C, Renson A; Genomic Standards Consortium; Massive Analysis and Quality Control Society; Zohra F, Elsafoury S, Geistlinger L, Kasselman LJ, Eckenrode K, van de Wijgert J, Loughman A, Marques FZ, MacIntyre DA, Arumugam M, Azhar R, Beghini F, Bergstrom K, Bhatt A, Bisanz JE, Braun J, Bravo HC, Buck GA, Bushman F, Casero D, Clarke G, Collado MC, Cotter PD, Cryan JF, Demmer RT, Devkota S, Elinav E, Escobar JS, Fettweis J, Finn RD, Fodor AA, Forslund S, Franke A, Furlanello C, Gilbert J, Grice E, Haibe-Kains B, Handley S, Herd P, Holmes S, Jacobs JP, Karstens L, Knight R, Knights D, Koren O, Kwon DS, Langille M, Lindsay B, McGovern D, McHardy AC, McWeeney S, Mueller NT, Nezi L, Olm M, Palm N, Pasolli E, Raes J, Redinbo MR, Rühlemann M, Balfour Sartor R, Schloss PD, Schriml L, Segal E, Shardell M, Sharpton T, Smirnova E, Sokol H, Sonnenburg JL, Srinivasan S, Thingholm LB, Turnbaugh PJ, Upadhyay V, Walls RL, Wilmes P, Yamada T, Zeller G, Zhang M, Zhao N, Zhao L, Bao W, Culhane A, Devanarayan V, Dopazo J, Fan X, Fischer M, Jones W, Kusko R, Mason CE, Mercer TR, Sansone SA, Scherer A, Shi L, Thakkar S, Tong W, Wolfinger R, Hunter C, Segata N, Huttenhower C, Dowd JB, Jones HE, Waldr…
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Mirzayi C, et al.
Nat Med. 2021 Nov;27(11):1885-1892. doi: 10.1038/s41591-021-01552-x. Epub 2021 Nov 17.
Nat Med. 2021.
PMID: 34789871
Free PMC article.
Review.
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Pili mediated intercellular forces shape heterogeneous bacterial microcolonies prior to multicellular differentiation.
Pönisch W, Eckenrode KB, Alzurqa K, Nasrollahi H, Weber C, Zaburdaev V, Biais N.
Pönisch W, et al. Among authors: eckenrode kb.
Sci Rep. 2018 Nov 8;8(1):16567. doi: 10.1038/s41598-018-34754-4.
Sci Rep. 2018.
PMID: 30410109
Free PMC article.
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Curated single cell multimodal landmark datasets for R/Bioconductor.
Eckenrode KB, Righelli D, Ramos M, Argelaguet R, Vanderaa C, Geistlinger L, Culhane AC, Gatto L, Carey V, Morgan M, Risso D, Waldron L.
Eckenrode KB, et al.
PLoS Comput Biol. 2023 Aug 25;19(8):e1011324. doi: 10.1371/journal.pcbi.1011324. eCollection 2023 Aug.
PLoS Comput Biol. 2023.
PMID: 37624866
Free PMC article.
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