Eddy SR - Search Results

1

Probabilistic phylogenetic inference with insertions and deletions.

Rivas E, Eddy SR. Rivas E, et al. Among authors: eddy sr. PLoS Comput Biol. 2008 Sep 19;4(9):e1000172. doi: 10.1371/journal.pcbi.1000172. PLoS Comput Biol. 2008. PMID: 18787703 Free PMC article.

2

ATV: display and manipulation of annotated phylogenetic trees.

Zmasek CM, Eddy SR. Zmasek CM, et al. Among authors: eddy sr. Bioinformatics. 2001 Apr;17(4):383-4. doi: 10.1093/bioinformatics/17.4.383. Bioinformatics. 2001. PMID: 11301314

3

A simple algorithm to infer gene duplication and speciation events on a gene tree.

Zmasek CM, Eddy SR. Zmasek CM, et al. Among authors: eddy sr. Bioinformatics. 2001 Sep;17(9):821-8. doi: 10.1093/bioinformatics/17.9.821. Bioinformatics. 2001. PMID: 11590098

4

Noncoding RNA gene detection using comparative sequence analysis.

Rivas E, Eddy SR. Rivas E, et al. Among authors: eddy sr. BMC Bioinformatics. 2001;2:8. doi: 10.1186/1471-2105-2-8. Epub 2001 Oct 10. BMC Bioinformatics. 2001. PMID: 11801179 Free PMC article.

5

Computational genomics of noncoding RNA genes.

Eddy SR. Eddy SR. Cell. 2002 Apr 19;109(2):137-40. doi: 10.1016/s0092-8674(02)00727-4. Cell. 2002. PMID: 12007398 Review.

6

RIO: analyzing proteomes by automated phylogenomics using resampled inference of orthologs.

Zmasek CM, Eddy SR. Zmasek CM, et al. Among authors: eddy sr. BMC Bioinformatics. 2002 May 16;3:14. doi: 10.1186/1471-2105-3-14. BMC Bioinformatics. 2002. PMID: 12028595 Free PMC article.

7

A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure.

Eddy SR. Eddy SR. BMC Bioinformatics. 2002 Jul 2;3:18. doi: 10.1186/1471-2105-3-18. BMC Bioinformatics. 2002. PMID: 12095421 Free PMC article.

8

Automated de novo identification of repeat sequence families in sequenced genomes.

Bao Z, Eddy SR. Bao Z, et al. Among authors: eddy sr. Genome Res. 2002 Aug;12(8):1269-76. doi: 10.1101/gr.88502. Genome Res. 2002. PMID: 12176934 Free PMC article.

9

Computational identification of non-coding RNAs in Saccharomyces cerevisiae by comparative genomics.

McCutcheon JP, Eddy SR. McCutcheon JP, et al. Among authors: eddy sr. Nucleic Acids Res. 2003 Jul 15;31(14):4119-28. doi: 10.1093/nar/gkg438. Nucleic Acids Res. 2003. PMID: 12853629 Free PMC article.

10

Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction.

Dowell RD, Eddy SR. Dowell RD, et al. Among authors: eddy sr. BMC Bioinformatics. 2004 Jun 4;5:71. doi: 10.1186/1471-2105-5-71. BMC Bioinformatics. 2004. PMID: 15180907 Free PMC article.

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