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Accelerated Profile HMM Searches.
Eddy SR. Eddy SR. PLoS Comput Biol. 2011 Oct;7(10):e1002195. doi: 10.1371/journal.pcbi.1002195. Epub 2011 Oct 20. PLoS Comput Biol. 2011. PMID: 22039361 Free PMC article.
Profile hidden Markov models.
Eddy SR. Eddy SR. Bioinformatics. 1998;14(9):755-63. doi: 10.1093/bioinformatics/14.9.755. Bioinformatics. 1998. PMID: 9918945 Review.
Local RNA structure alignment with incomplete sequence.
Kolbe DL, Eddy SR. Kolbe DL, et al. Among authors: eddy sr. Bioinformatics. 2009 May 15;25(10):1236-43. doi: 10.1093/bioinformatics/btp154. Epub 2009 Mar 20. Bioinformatics. 2009. PMID: 19304875 Free PMC article.
Infernal 1.0: inference of RNA alignments.
Nawrocki EP, Kolbe DL, Eddy SR. Nawrocki EP, et al. Among authors: eddy sr. Bioinformatics. 2009 May 15;25(10):1335-7. doi: 10.1093/bioinformatics/btp157. Epub 2009 Mar 23. Bioinformatics. 2009. PMID: 19307242 Free PMC article.
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