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A benchmark for comparison of cell tracking algorithms.
Maška M, Ulman V, Svoboda D, Matula P, Matula P, Ederra C, Urbiola A, España T, Venkatesan S, Balak DM, Karas P, Bolcková T, Streitová M, Carthel C, Coraluppi S, Harder N, Rohr K, Magnusson KE, Jaldén J, Blau HM, Dzyubachyk O, Křížek P, Hagen GM, Pastor-Escuredo D, Jimenez-Carretero D, Ledesma-Carbayo MJ, Muñoz-Barrutia A, Meijering E, Kozubek M, Ortiz-de-Solorzano C. Maška M, et al. Among authors: ederra c. Bioinformatics. 2014 Jun 1;30(11):1609-17. doi: 10.1093/bioinformatics/btu080. Epub 2014 Feb 12. Bioinformatics. 2014. PMID: 24526711 Free PMC article.
Characterization of three-dimensional cancer cell migration in mixed collagen-Matrigel scaffolds using microfluidics and image analysis.
Anguiano M, Castilla C, Maška M, Ederra C, Peláez R, Morales X, Muñoz-Arrieta G, Mujika M, Kozubek M, Muñoz-Barrutia A, Rouzaut A, Arana S, Garcia-Aznar JM, Ortiz-de-Solorzano C. Anguiano M, et al. Among authors: ederra c. PLoS One. 2017 Feb 6;12(2):e0171417. doi: 10.1371/journal.pone.0171417. eCollection 2017. PLoS One. 2017. PMID: 28166248 Free PMC article.
Muscular and Tendon Degeneration after Achilles Rupture: New Insights into Future Repair Strategies.
Gil-Melgosa L, Grasa J, Urbiola A, Llombart R, Susaeta Ruiz M, Montiel V, Ederra C, Calvo B, Ariz M, Ripalda-Cemborain P, Prosper F, Ortiz-de-Solórzano C, Pons-Villanueva J, Pérez Ruiz A. Gil-Melgosa L, et al. Among authors: ederra c. Biomedicines. 2021 Dec 23;10(1):19. doi: 10.3390/biomedicines10010019. Biomedicines. 2021. PMID: 35052699 Free PMC article.
The use of mixed collagen-Matrigel matrices of increasing complexity recapitulates the biphasic role of cell adhesion in cancer cell migration: ECM sensing, remodeling and forces at the leading edge of cancer invasion.
Anguiano M, Morales X, Castilla C, Pena AR, Ederra C, Martínez M, Ariz M, Esparza M, Amaveda H, Mora M, Movilla N, Aznar JMG, Cortés-Domínguez I, Ortiz-de-Solorzano C. Anguiano M, et al. Among authors: ederra c. PLoS One. 2020 Jan 16;15(1):e0220019. doi: 10.1371/journal.pone.0220019. eCollection 2020. PLoS One. 2020. PMID: 31945053 Free PMC article.
The Cell Tracking Challenge: 10 years of objective benchmarking.
Maška M, Ulman V, Delgado-Rodriguez P, Gómez-de-Mariscal E, Nečasová T, Guerrero Peña FA, Ren TI, Meyerowitz EM, Scherr T, Löffler K, Mikut R, Guo T, Wang Y, Allebach JP, Bao R, Al-Shakarji NM, Rahmon G, Toubal IE, Palaniappan K, Lux F, Matula P, Sugawara K, Magnusson KEG, Aho L, Cohen AR, Arbelle A, Ben-Haim T, Raviv TR, Isensee F, Jäger PF, Maier-Hein KH, Zhu Y, Ederra C, Urbiola A, Meijering E, Cunha A, Muñoz-Barrutia A, Kozubek M, Ortiz-de-Solórzano C. Maška M, et al. Among authors: ederra c. Nat Methods. 2023 Jul;20(7):1010-1020. doi: 10.1038/s41592-023-01879-y. Epub 2023 May 18. Nat Methods. 2023. PMID: 37202537 Free PMC article.