Edwards RA - Search Results

1

Applying Shannon's information theory to bacterial and phage genomes and metagenomes.

Akhter S, Bailey BA, Salamon P, Aziz RK, Edwards RA. Akhter S, et al. Among authors: edwards ra. Sci Rep. 2013;3:1033. doi: 10.1038/srep01033. Epub 2013 Jan 8. Sci Rep. 2013. PMID: 23301154 Free PMC article.

2

The Phage Proteomic Tree: a genome-based taxonomy for phage.

Rohwer F, Edwards R. Rohwer F, et al. J Bacteriol. 2002 Aug;184(16):4529-35. doi: 10.1128/jb.184.16.4529-4535.2002. J Bacteriol. 2002. PMID: 12142423 Free PMC article.

3

Viral metagenomics.

Edwards RA, Rohwer F. Edwards RA, et al. Nat Rev Microbiol. 2005 Jun;3(6):504-10. doi: 10.1038/nrmicro1163. Nat Rev Microbiol. 2005. PMID: 15886693 Review.

4

The marine viromes of four oceanic regions.

Angly FE, Felts B, Breitbart M, Salamon P, Edwards RA, Carlson C, Chan AM, Haynes M, Kelley S, Liu H, Mahaffy JM, Mueller JE, Nulton J, Olson R, Parsons R, Rayhawk S, Suttle CA, Rohwer F. Angly FE, et al. Among authors: edwards ra. PLoS Biol. 2006 Nov;4(11):e368. doi: 10.1371/journal.pbio.0040368. PLoS Biol. 2006. PMID: 17090214 Free PMC article.

5

Biodiversity and biogeography of phages in modern stromatolites and thrombolites.

Desnues C, Rodriguez-Brito B, Rayhawk S, Kelley S, Tran T, Haynes M, Liu H, Furlan M, Wegley L, Chau B, Ruan Y, Hall D, Angly FE, Edwards RA, Li L, Thurber RV, Reid RP, Siefert J, Souza V, Valentine DL, Swan BK, Breitbart M, Rohwer F. Desnues C, et al. Among authors: edwards ra. Nature. 2008 Mar 20;452(7185):340-3. doi: 10.1038/nature06735. Epub 2008 Mar 2. Nature. 2008. PMID: 18311127

6

TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets.

Schmieder R, Lim YW, Rohwer F, Edwards R. Schmieder R, et al. BMC Bioinformatics. 2010 Jun 23;11:341. doi: 10.1186/1471-2105-11-341. BMC Bioinformatics. 2010. PMID: 20573248 Free PMC article.

7

Quality control and preprocessing of metagenomic datasets.

Schmieder R, Edwards R. Schmieder R, et al. Bioinformatics. 2011 Mar 15;27(6):863-4. doi: 10.1093/bioinformatics/btr026. Epub 2011 Jan 28. Bioinformatics. 2011. PMID: 21278185 Free PMC article.

8

Identification and removal of ribosomal RNA sequences from metatranscriptomes.

Schmieder R, Lim YW, Edwards R. Schmieder R, et al. Bioinformatics. 2012 Feb 1;28(3):433-5. doi: 10.1093/bioinformatics/btr669. Epub 2011 Dec 6. Bioinformatics. 2012. PMID: 22155869 Free PMC article.

9

Insights into antibiotic resistance through metagenomic approaches.

Schmieder R, Edwards R. Schmieder R, et al. Future Microbiol. 2012 Jan;7(1):73-89. doi: 10.2217/fmb.11.135. Future Microbiol. 2012. PMID: 22191448 Review.

10

PHACTS, a computational approach to classifying the lifestyle of phages.

McNair K, Bailey BA, Edwards RA. McNair K, et al. Among authors: edwards ra. Bioinformatics. 2012 Mar 1;28(5):614-8. doi: 10.1093/bioinformatics/bts014. Epub 2012 Jan 11. Bioinformatics. 2012. PMID: 22238260 Free PMC article.

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