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ProMEX - a mass spectral reference database for plant proteomics.
Wienkoop S, Staudinger C, Hoehenwarter W, Weckwerth W, Egelhofer V. Wienkoop S, et al. Among authors: egelhofer v. Front Plant Sci. 2012 Jun 6;3:125. doi: 10.3389/fpls.2012.00125. eCollection 2012. Front Plant Sci. 2012. PMID: 22685450 Free PMC article.
Automated protein turnover calculations from 15N partial metabolic labeling LC/MS shotgun proteomics data.
Lyon D, Castillejo MA, Staudinger C, Weckwerth W, Wienkoop S, Egelhofer V. Lyon D, et al. Among authors: egelhofer v. PLoS One. 2014 Apr 15;9(4):e94692. doi: 10.1371/journal.pone.0094692. eCollection 2014. PLoS One. 2014. PMID: 24736476 Free PMC article.
Medicago truncatula proteomics for systems biology: novel rapid shotgun LC-MS approach for relative quantification based on full-scan selective peptide extraction (Selpex).
Castillejo MA, Staudinger C, Egelhofer V, Wienkoop S. Castillejo MA, et al. Among authors: egelhofer v. Methods Mol Biol. 2014;1072:303-13. doi: 10.1007/978-1-62703-631-3_22. Methods Mol Biol. 2014. PMID: 24136531
From proteomics to systems biology: MAPA, MASS WESTERN, PROMEX, and COVAIN as a user-oriented platform.
Weckwerth W, Wienkoop S, Hoehenwarter W, Egelhofer V, Sun X. Weckwerth W, et al. Among authors: egelhofer v. Methods Mol Biol. 2014;1072:15-27. doi: 10.1007/978-1-62703-631-3_2. Methods Mol Biol. 2014. PMID: 24136511
Using ProtMAX to create high-mass-accuracy precursor alignments from label-free quantitative mass spectrometry data generated in shotgun proteomics experiments.
Egelhofer V, Hoehenwarter W, Lyon D, Weckwerth W, Wienkoop S. Egelhofer V, et al. Nat Protoc. 2013 Mar;8(3):595-601. doi: 10.1038/nprot.2013.013. Epub 2013 Feb 28. Nat Protoc. 2013. PMID: 23449253
Possible Role of Nutritional Priming for Early Salt and Drought Stress Responses in Medicago truncatula.
Staudinger C, Mehmeti V, Turetschek R, Lyon D, Egelhofer V, Wienkoop S. Staudinger C, et al. Among authors: egelhofer v. Front Plant Sci. 2012 Dec 21;3:285. doi: 10.3389/fpls.2012.00285. eCollection 2012. Front Plant Sci. 2012. PMID: 23267362 Free PMC article.
Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.
Hoehenwarter W, Thomas M, Nukarinen E, Egelhofer V, Röhrig H, Weckwerth W, Conrath U, Beckers GJ. Hoehenwarter W, et al. Among authors: egelhofer v. Mol Cell Proteomics. 2013 Feb;12(2):369-80. doi: 10.1074/mcp.M112.020560. Epub 2012 Nov 20. Mol Cell Proteomics. 2013. PMID: 23172892 Free PMC article.
The different proteomes of Chlamydomonas reinhardtii.
Valledor L, Recuenco-Munoz L, Egelhofer V, Wienkoop S, Weckwerth W. Valledor L, et al. Among authors: egelhofer v. J Proteomics. 2012 Oct 22;75(18):5883-7. doi: 10.1016/j.jprot.2012.07.045. Epub 2012 Aug 7. J Proteomics. 2012. PMID: 22967953
Targeted proteomics for Chlamydomonas reinhardtii combined with rapid subcellular protein fractionation, metabolomics and metabolic flux analyses.
Wienkoop S, Weiss J, May P, Kempa S, Irgang S, Recuenco-Munoz L, Pietzke M, Schwemmer T, Rupprecht J, Egelhofer V, Weckwerth W. Wienkoop S, et al. Among authors: egelhofer v. Mol Biosyst. 2010 Jun;6(6):1018-31. doi: 10.1039/b920913a. Epub 2010 Mar 31. Mol Biosyst. 2010. PMID: 20358043
MAPA distinguishes genotype-specific variability of highly similar regulatory protein isoforms in potato tuber.
Hoehenwarter W, Larhlimi A, Hummel J, Egelhofer V, Selbig J, van Dongen JT, Wienkoop S, Weckwerth W. Hoehenwarter W, et al. Among authors: egelhofer v. J Proteome Res. 2011 Jul 1;10(7):2979-91. doi: 10.1021/pr101109a. Epub 2011 May 26. J Proteome Res. 2011. PMID: 21563841
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